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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0589300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Viral coat and capsid protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0326) R2 : 0.623
β1 : 3.14 (0.122) R2dD : 0.6 R2D : 0.326
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.924 (0.0941) R2dE : 0.0816 R2E : -0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.07 (0.0708) R2dN8 : 0.261 R2N8 : 0.0255
σ : 0.606
deviance : 169.19
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.99
memory length : 721
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.74 0.596 5.54 3.45 0.594 -0.907 -0.92 1.91 0.868 5.09 29.86 1217 -- --
159.86 0.589 5.54 3.11 0.57 -0.809 -0.929 -- 1.01 4.71 29.2 1133 -- --
162.62 0.594 5.54 3.43 0.608 -0.906 -- 1.73 0.886 5.05 29.8 1190 -- --
161.82 0.592 5.54 3.09 0.581 -0.759 -- -- 0.995 4.99 29.14 1186 -- --
169.58 0.607 5.53 3.3 -- -1.14 -- 1.23 1.03 -- 28.92 868 -- --
184.81 0.637 5.57 2.86 0.554 -- -0.977 -- 0.901 5.63 -- -- -- --
186.98 0.64 5.56 2.85 0.552 -- -- -- 0.906 6.01 -- -- -- --
169.19 0.606 5.54 3.14 -- -0.924 -- -- 1.07 -- 26.99 721 -- --
397.39 0.934 5.64 -- 0.702 0.301 -- -- 0.576 5.18 29.14 1186 -- --
202.74 0.665 5.57 2.87 -- -- -- -- 0.918 -- -- -- -- --
401.76 0.938 5.63 -- 0.595 -- -- -- 0.588 5.77 -- -- -- --
276.2 0.774 5.74 -- -- 2 -- -- 0.163 -- 17.85 47520 -- --
420.14 0.957 5.64 -- -- -- -- -- 0.6 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.76 temperature 25 720 > th dose dependent rect. 15 12
15 151.42 temperature 25 720 > th dose dependent sin 13 NA
38 153.14 temperature 25 720 > th dose dependent rect. 17 2
82 156.15 radiation 1 720 < th dose dependent rect. 6 19
91 156.74 radiation 1 720 > th dose independent rect. 17 2
110 157.38 radiation 20 1440 > th dose independent rect. 16 15
112 157.43 radiation 1 720 < th dose independent rect. 16 8
117 158.18 radiation 20 1440 > th dose independent rect. 16 1
133 158.24 humidity 90 720 < th dose dependent rect. 17 2
135 158.31 humidity 70 720 < th dose independent sin 11 NA
137 158.35 humidity 80 720 < th dose independent rect. 17 2
153 158.80 radiation 1 720 < th dose dependent rect. 14 10
164 159.13 radiation 1 720 < th dose independent rect. 6 18
172 159.21 radiation 20 1440 > th dose dependent rect. 16 16
173 159.23 humidity 70 720 > th dose independent sin 13 NA
175 159.27 humidity 90 720 < th dose dependent rect. 16 7
179 159.36 temperature 25 270 > th dose independent rect. 14 13
185 159.41 humidity 50 720 > th dose dependent rect. 17 7
188 159.48 radiation 20 1440 < th dose independent rect. 16 1
189 159.53 humidity 70 720 < th dose independent rect. 17 16
191 159.57 radiation 20 1440 < th dose independent rect. 16 4
198 159.63 radiation 20 1440 < th dose independent rect. 16 7
201 159.65 humidity 90 720 < th dose dependent rect. 16 20
206 159.71 radiation 20 1440 < th dose independent rect. 16 11
207 159.71 radiation 20 1440 < th dose independent rect. 16 15
210 159.74 humidity 80 43200 < th dose independent rect. 5 1
211 159.75 wind 3 43200 > th dose dependent rect. 6 1
212 159.77 humidity 70 720 > th dose independent rect. 18 6
217 159.85 humidity 60 720 > th dose dependent rect. 3 21
218 159.86 humidity 70 720 > th dose independent rect. 15 16
230 160.04 temperature 25 720 > th dose dependent rect. 21 2
232 160.05 temperature 25 720 > th dose independent rect. 17 2
238 160.07 radiation 20 1440 > th dose dependent rect. 6 2
262 160.13 wind 3 43200 > th dose independent rect. 6 4
270 160.19 temperature 25 720 > th dose independent rect. 15 9
279 160.26 temperature 30 720 < th dose independent rect. 17 7
287 160.36 radiation 30 1440 > th dose independent rect. 7 1
312 160.46 radiation 30 1440 < th dose independent rect. 7 1
321 160.51 wind 3 43200 > th dose dependent rect. 3 13
326 160.57 wind 5 43200 > th dose dependent rect. 12 2
327 160.57 wind 3 43200 > th dose dependent rect. 5 10
328 160.59 wind 7 43200 < th dose independent rect. 12 2
329 160.60 wind 3 43200 > th dose independent rect. 4 6
330 160.60 wind 3 43200 > th dose dependent sin 3 NA
331 160.61 wind 3 43200 > th dose independent rect. 2 8
332 160.61 temperature 30 720 < th dose independent rect. 17 14
336 160.61 humidity 80 43200 < th dose dependent rect. 1 7
341 160.62 wind 3 43200 > th dose dependent rect. 24 16
344 160.65 wind 3 43200 < th dose independent rect. 6 4
347 160.65 humidity 80 720 < th dose dependent rect. 17 16
351 160.68 wind 7 43200 > th dose independent rect. 12 2
354 160.69 humidity 80 43200 < th dose dependent rect. 22 10
361 160.73 radiation 10 43200 > th dose independent rect. 10 1
378 160.81 wind 3 43200 < th dose independent rect. 2 8
402 160.92 humidity 80 43200 > th dose independent rect. 4 1
410 160.97 humidity 80 43200 > th dose independent rect. 23 6
421 161.00 humidity 80 43200 > th dose independent rect. 23 4
427 161.01 humidity 80 43200 > th dose independent rect. 23 2
440 161.05 wind 7 43200 > th dose independent rect. 10 6
443 161.06 wind 7 43200 < th dose independent rect. 10 6
472 161.14 wind 5 43200 < th dose independent rect. 5 11
475 161.15 humidity 80 43200 < th dose dependent rect. 5 1
477 161.16 wind 3 43200 > th dose dependent rect. 20 20
483 161.19 wind 5 43200 < th dose independent sin 2 NA
518 161.31 wind 5 43200 > th dose dependent rect. 10 5
520 161.32 wind 5 43200 > th dose independent rect. 5 11
545 161.39 wind 5 43200 > th dose dependent rect. 9 7
571 161.43 wind 7 43200 > th dose independent rect. 24 16
575 161.44 humidity 80 43200 < th dose independent rect. 22 8
577 161.44 wind 3 43200 > th dose independent rect. 21 13
584 161.47 wind 5 43200 > th dose independent sin 2 NA
619 161.54 humidity 80 720 > th dose independent rect. 4 18
649 161.59 wind 7 43200 > th dose independent rect. 19 21
652 161.60 wind 7 43200 > th dose independent rect. 10 12
658 161.61 wind 7 43200 < th dose independent rect. 10 12
664 161.62 temperature 30 720 < th dose independent rect. 12 19
707 161.66 wind 7 43200 > th dose independent rect. 17 23
709 161.67 humidity 80 43200 < th dose independent rect. 22 3
714 161.68 wind 7 43200 < th dose independent rect. 17 23
715 161.68 wind 1 43200 > th dose dependent rect. 6 4
726 161.70 temperature 30 720 > th dose independent rect. 17 16
735 161.71 wind 5 43200 < th dose independent rect. 19 22
752 161.74 wind 7 43200 < th dose independent rect. 10 20
754 161.74 humidity 80 43200 < th dose dependent rect. 22 1
770 161.75 wind 5 43200 < th dose independent rect. 15 22
772 161.75 wind 7 43200 > th dose independent rect. 19 23
785 161.77 wind 7 43200 > th dose independent rect. 10 20
786 161.77 wind 1 43200 > th dose dependent rect. 9 1
801 161.79 wind 7 43200 < th dose independent rect. 10 18
813 161.81 humidity 70 720 > th dose independent rect. 15 9
814 161.81 wind 3 43200 < th dose independent rect. 21 13
837 161.83 wind 7 43200 < th dose independent rect. 3 19
847 161.84 wind 7 43200 < th dose independent rect. 24 22
848 161.84 wind 5 43200 < th dose dependent rect. 9 1
862 161.85 wind 7 43200 > th dose independent rect. 24 21
869 161.86 wind 7 43200 > th dose independent rect. 3 19
881 161.87 wind 7 43200 > th dose independent rect. 5 17
904 161.89 humidity 60 1440 < th dose independent rect. 13 5
915 161.89 radiation 1 720 > th dose dependent rect. 17 13
925 161.91 temperature 30 1440 > th dose independent rect. 13 1
933 161.91 humidity 80 43200 < th dose dependent rect. 2 4
944 161.93 humidity 60 1440 > th dose independent rect. 13 5
964 161.94 radiation 1 720 > th dose independent rect. 7 12