Os06g0587500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0587500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.41 | 0.327 | 3.16 | -0.0409 | 0.103 | 7.91 | -0.0342 | -25.7 | -0.0243 | 5.14 | 1.5 | 85 | -- | -- |
| 49.05 | 0.326 | 3.15 | 0.0378 | 0.0915 | 1.88 | -0.0126 | -- | -0.0296 | 3.22 | 1.5 | 74 | -- | -- |
| 48.41 | 0.324 | 3.16 | -0.0406 | 0.103 | 7.9 | -- | -25.6 | -0.024 | 5.19 | 1.505 | 85 | -- | -- |
| 48.83 | 0.325 | 3.14 | 0.0336 | 0.102 | 2.12 | -- | -- | -0.0202 | 5.21 | 1.5 | 155 | -- | -- |
| 48.96 | 0.326 | 3.16 | -0.0384 | -- | 7.98 | -- | -26.2 | -0.0217 | -- | 1.51 | 81 | -- | -- |
| 53.91 | 0.344 | 3.14 | 0.0599 | 0.0784 | -- | -0.145 | -- | -0.0295 | 4.76 | -- | -- | -- | -- |
| 53.97 | 0.344 | 3.14 | 0.0605 | 0.0776 | -- | -- | -- | -0.0288 | 4.82 | -- | -- | -- | -- |
| 49.4 | 0.327 | 3.14 | 0.0406 | -- | 2.03 | -- | -- | -0.0213 | -- | 1.5 | 128 | -- | -- |
| 48.86 | 0.326 | 3.14 | -- | 0.106 | 2.11 | -- | -- | -0.0272 | 5.32 | 1.5 | 155 | -- | -- |
| 54.29 | 0.344 | 3.14 | 0.0634 | -- | -- | -- | -- | -0.0268 | -- | -- | -- | -- | -- |
| 54.07 | 0.344 | 3.14 | -- | 0.0787 | -- | -- | -- | -0.0355 | 4.79 | -- | -- | -- | -- |
| 49.44 | 0.327 | 3.14 | -- | -- | 2.04 | -- | -- | -0.0255 | -- | 1.5 | 132 | -- | -- |
| 54.39 | 0.344 | 3.14 | -- | -- | -- | -- | -- | -0.0338 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.36 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 2 | 48.36 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 3 | 48.38 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 3 |
| 12 | 48.49 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 17 | 48.52 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 45 | 48.52 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 262 | 48.99 | precipitation | 0.1 | 10 | > th | dose independent | sin | 20 | NA |
| 263 | 48.99 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 20 | NA |
| 264 | 49.02 | precipitation | 0.1 | 10 | < th | dose independent | sin | 20 | NA |
| 265 | 49.02 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 20 | NA |
| 278 | 49.06 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 20 | NA |
| 379 | 49.40 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 381 | 49.41 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 4 | 14 |
| 484 | 49.91 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 531 | 50.02 | precipitation | 0.1 | 90 | > th | dose independent | sin | 21 | NA |
| 532 | 50.02 | precipitation | 0.1 | 90 | < th | dose independent | sin | 20 | NA |
| 533 | 50.02 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 20 | NA |
| 610 | 50.20 | precipitation | 0.1 | 90 | > th | dose dependent | no | NA | NA |
| 656 | 50.39 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 14 | 4 |
| 667 | 50.46 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 705 | 50.62 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 715 | 50.66 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 724 | 50.70 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 2 | 17 |
| 741 | 50.77 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 22 | 21 |
| 765 | 50.81 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 827 | 51.09 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 1 |
| 836 | 51.14 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 846 | 51.17 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 862 | 51.22 | wind | 1.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 881 | 51.26 | wind | 1.0 | 30 | < th | dose dependent | rect. | 17 | 10 |
| 885 | 51.27 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 19 |
| 995 | 51.43 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 1 |