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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0587000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0303) R2 : 0.00154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0536 (0.0638) R2dN8 : 0.00199 R2N8 : 0.00154
σ : 0.571
deviance : 149.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.58 0.561 2.92 -0.0922 0.0894 -0.168 -0.852 2.06 0.0658 5.57 5.2 87 -- --
147.86 0.571 2.96 -0.103 0.0875 -0.122 -0.188 -- 0.0393 11.3 7.684 154 -- --
143.61 0.558 2.92 -0.0943 0.0889 -0.0893 -- 1.71 0.072 10.2 5.401 85 -- --
147.87 0.566 2.96 -0.0963 0.105 -0.194 -- -- 0.0401 9.75 19.2 154 -- --
143.99 0.559 2.93 -0.117 -- -0.085 -- 1.57 0.0641 -- 5.338 85 -- --
148.06 0.57 2.96 -0.131 0.111 -- -0.217 -- 0.0409 12.8 -- -- -- --
148.26 0.57 2.96 -0.139 0.111 -- -- -- 0.0397 12.6 -- -- -- --
148.4 0.57 2.96 -0.101 -- -0.182 -- -- 0.0384 -- 20.49 149 -- --
148.09 0.567 2.96 -- 0.111 -0.228 -- -- 0.0539 9.33 10.81 154 -- --
149.03 0.57 2.96 -0.143 -- -- -- -- 0.0377 -- -- -- -- --
148.77 0.571 2.96 -- 0.114 -- -- -- 0.0551 12.7 -- -- -- --
148.65 0.57 2.96 -- -- -0.212 -- -- 0.049 -- 20.49 149 -- --
149.57 0.571 2.96 -- -- -- -- -- 0.0536 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.18 wind 1.0 30 < th dose dependent rect. 10 2
2 136.30 temperature 10.0 1440 > th dose independent rect. 21 1
5 136.30 temperature 30.0 1440 < th dose independent rect. 21 1
9 136.30 humidity 50.0 1440 > th dose independent rect. 21 1
15 136.30 atmosphere 995.0 1440 > th dose independent rect. 21 1
16 136.30 radiation 1.0 1440 < th dose independent rect. 21 1
36 136.30 temperature 10.0 1440 > th dose independent rect. 22 23
39 136.34 radiation 40.0 1440 < th dose dependent rect. 21 1
41 136.37 wind 1.0 720 < th dose dependent rect. 11 1
44 136.44 wind 1.0 90 < th dose independent rect. 11 1
45 136.44 wind 1.0 720 < th dose independent rect. 11 1
50 136.60 temperature 25.0 30 > th dose independent rect. 20 1
52 136.66 humidity 80.0 30 > th dose independent rect. 20 1
54 136.70 humidity 90.0 30 < th dose independent rect. 20 1
59 136.81 atmosphere 1005.0 30 > th dose dependent rect. 20 1
60 136.82 wind 5.0 30 < th dose independent rect. 20 1
67 136.97 temperature 15.0 30 > th dose dependent rect. 20 1
69 136.99 atmosphere 1000.0 30 > th dose independent rect. 20 1
71 137.02 wind 9.0 30 < th dose dependent rect. 20 1
74 137.06 wind 1.0 30 > th dose independent rect. 20 1
76 137.06 temperature 10.0 30 > th dose independent rect. 20 1
78 137.06 temperature 30.0 30 < th dose independent rect. 20 1
79 137.06 humidity 50.0 30 > th dose independent rect. 20 1
83 137.06 atmosphere 1010.0 30 < th dose independent rect. 20 1
85 137.06 radiation 1.0 30 < th dose independent rect. 20 1
90 137.06 precipitation 0.1 30 < th dose independent rect. 20 1
91 137.06 temperature 10.0 30 > th dose independent rect. 21 23
92 137.06 radiation 1.0 30 < th dose dependent rect. 20 1
97 137.06 precipitation 0.1 30 < th dose dependent rect. 20 1
100 137.08 humidity 50.0 30 > th dose dependent rect. 20 1
111 137.38 wind 1.0 30 > th dose dependent rect. 20 1
116 137.58 humidity 90.0 720 > th dose independent rect. 10 3
117 137.58 humidity 90.0 720 > th dose dependent rect. 10 3
119 137.65 atmosphere 1015.0 30 < th dose dependent rect. 20 1
121 137.76 humidity 90.0 30 < th dose dependent rect. 20 1
125 137.86 precipitation 0.1 720 > th dose independent rect. 8 1
126 137.86 precipitation 0.1 720 > th dose dependent rect. 8 1
133 137.98 temperature 30.0 30 < th dose dependent rect. 20 1
135 137.99 precipitation 0.1 720 > th dose independent rect. 9 4
136 137.99 precipitation 0.1 720 > th dose dependent rect. 9 4
147 138.03 humidity 90.0 720 > th dose independent rect. 10 1
151 138.14 humidity 90.0 720 > th dose dependent rect. 10 1
162 138.65 wind 9.0 1440 < th dose independent rect. 21 1
165 138.67 wind 3.0 90 < th dose dependent rect. 10 8
177 138.88 wind 1.0 1440 > th dose independent rect. 11 1
178 138.90 wind 9.0 30 < th dose independent rect. 21 23
180 138.92 wind 3.0 90 < th dose dependent rect. 10 11
192 139.26 wind 3.0 90 < th dose dependent rect. 10 13
256 140.22 wind 3.0 90 < th dose independent rect. 10 13
258 140.25 radiation 40.0 30 > th dose dependent rect. 11 1
271 140.74 radiation 10.0 30 > th dose dependent rect. 11 22
276 140.86 humidity 60.0 1440 > th dose independent rect. 3 6
281 140.90 humidity 60.0 1440 > th dose independent rect. 8 1
282 140.92 humidity 60.0 1440 > th dose independent rect. 22 11
296 141.02 wind 3.0 90 < th dose dependent sin 22 NA
344 141.12 humidity 60.0 1440 > th dose independent rect. 5 4
363 141.14 wind 3.0 90 < th dose independent rect. 10 7
367 141.18 precipitation 0.1 720 > th dose independent rect. 6 1
368 141.18 precipitation 0.1 720 > th dose dependent rect. 6 1
393 141.24 wind 3.0 90 < th dose independent rect. 10 11
394 141.24 wind 3.0 90 > th dose independent rect. 8 13
408 141.31 humidity 60.0 1440 < th dose independent rect. 8 1
424 141.33 humidity 60.0 1440 < th dose dependent rect. 8 1
430 141.33 radiation 10.0 30 > th dose dependent rect. 11 5
445 141.37 humidity 60.0 90 < th dose independent rect. 16 18
446 141.37 temperature 25.0 90 < th dose dependent rect. 10 1
448 141.38 humidity 60.0 1440 > th dose independent rect. 20 13
529 141.55 wind 5.0 90 < th dose dependent rect. 1 23
556 141.57 humidity 60.0 90 < th dose dependent rect. 16 18
564 141.62 wind 5.0 90 < th dose dependent rect. 10 23
608 141.76 wind 3.0 90 < th dose independent sin 22 NA
610 141.77 humidity 60.0 10 < th dose independent rect. 17 18
617 141.79 wind 3.0 90 > th dose independent rect. 24 21
618 141.80 radiation 1.0 10 < th dose independent rect. 11 3
627 141.80 radiation 1.0 10 < th dose dependent rect. 11 3
645 141.85 wind 3.0 90 > th dose independent sin 21 NA
688 141.92 wind 3.0 90 < th dose independent rect. 2 22
731 141.99 wind 1.0 10 < th dose dependent rect. 6 4
788 142.05 radiation 40.0 30 > th dose independent rect. 11 3
791 142.05 radiation 1.0 10 < th dose dependent rect. 6 8
793 142.06 humidity 60.0 270 < th dose independent rect. 8 1
827 142.06 atmosphere 1000.0 90 < th dose dependent rect. 5 3
867 142.08 radiation 40.0 30 > th dose independent rect. 11 1
868 142.08 atmosphere 1000.0 10 < th dose independent rect. 5 4
874 142.09 atmosphere 1000.0 10 < th dose dependent rect. 5 4
877 142.10 atmosphere 1000.0 270 < th dose independent rect. 4 1
882 142.10 atmosphere 1000.0 270 < th dose dependent rect. 4 1
905 142.12 wind 3.0 90 < th dose dependent rect. 7 16