Os06g0583900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment).
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Os06g0583900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 343.74 | 0.864 | 2650 | -16200 | 0.0512 | 610000 | 0.305 | -3730000 | -0.0702 | 21.2 | 995 | 10 | -- | -- |
| 343.74 | 0.87 | 2.92 | 0.0706 | 0.051 | 4.05 | 0.304 | -- | -0.0703 | 21.2 | 995 | 10 | -- | -- |
| 344.04 | 0.864 | 2650 | -16200 | 0.0574 | 610000 | -- | -3730000 | -0.0699 | 19.6 | 995 | 10 | -- | -- |
| 344.04 | 0.87 | 2.92 | 0.0608 | 0.0572 | 4.05 | -- | -- | -0.07 | 19.6 | 995 | 12 | -- | -- |
| 344.21 | 0.864 | 2650 | -16200 | -- | 610000 | -- | -3730000 | -0.0709 | -- | 995 | 10 | -- | -- |
| 375.81 | 0.909 | 2.93 | 0.114 | 0.123 | -- | 0.468 | -- | -0.0876 | 19.1 | -- | -- | -- | -- |
| 376.34 | 0.908 | 2.93 | 0.106 | 0.129 | -- | -- | -- | -0.086 | 18.3 | -- | -- | -- | -- |
| 344.21 | 0.868 | 2.92 | 0.0597 | -- | 4.08 | -- | -- | -0.0707 | -- | 995 | 19 | -- | -- |
| 344.13 | 0.869 | 2.93 | -- | 0.0565 | 4.06 | -- | -- | -0.0767 | 19.6 | 995 | 13 | -- | -- |
| 377.2 | 0.908 | 2.93 | 0.103 | -- | -- | -- | -- | -0.0888 | -- | -- | -- | -- | -- |
| 376.63 | 0.908 | 2.93 | -- | 0.128 | -- | -- | -- | -0.0978 | 18.3 | -- | -- | -- | -- |
| 344.3 | 0.867 | 2.92 | -- | -- | 4.08 | -- | -- | -0.0773 | -- | 995 | 19 | -- | -- |
| 377.48 | 0.907 | 2.93 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 338.79 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 14 | 4 |
| 3 | 340.14 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 14 | 342.61 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 5 | 3 |
| 17 | 342.61 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 21 | 343.19 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 22 | 343.31 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 15 | 3 |
| 23 | 343.37 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 1 |
| 24 | 343.37 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 36 | 343.70 | atmosphere | 995.0 | 10 | > th | dose independent | sin | 19 | NA |
| 61 | 344.13 | atmosphere | 995.0 | 10 | < th | dose independent | sin | 19 | NA |
| 63 | 344.14 | atmosphere | 995.0 | 10 | < th | dose independent | no | NA | NA |
| 65 | 344.14 | atmosphere | 995.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 69 | 344.14 | atmosphere | 995.0 | 10 | < th | dose independent | rect. | 15 | 4 |
| 505 | 344.14 | atmosphere | 995.0 | 10 | < th | dose dependent | sin | 13 | NA |
| 547 | 344.15 | atmosphere | 995.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 549 | 344.15 | atmosphere | 995.0 | 30 | < th | dose dependent | sin | 18 | NA |
| 550 | 344.15 | atmosphere | 995.0 | 90 | < th | dose dependent | sin | 22 | NA |
| 556 | 344.16 | atmosphere | 995.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 557 | 344.18 | atmosphere | 995.0 | 10 | > th | dose independent | no | NA | NA |
| 607 | 344.22 | atmosphere | 995.0 | 30 | < th | dose dependent | no | NA | NA |
| 819 | 344.23 | atmosphere | 995.0 | 10 | > th | dose independent | sin | 7 | NA |