Os06g0581500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0581500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 458.32 | 1.01 | 11.7 | 4.76 | 2.02 | -2.55 | 0.479 | 3.57 | 0.844 | 21.8 | 0.1805 | 3515 | 1.64 | -- |
| 467.74 | 1.01 | 11.7 | 4.89 | 2.03 | -2.1 | 0.298 | -- | 0.882 | 21.8 | 0.18 | 3544 | 1.73 | -- |
| 459.14 | 0.998 | 11.7 | 4.74 | 2.01 | -2.55 | -- | 3.5 | 0.847 | 21.8 | 0.2014 | 3514 | 1.48 | -- |
| 467.97 | 1.01 | 11.7 | 4.87 | 2.03 | -2.09 | -- | -- | 0.882 | 21.8 | 0.209 | 3585 | 1.65 | -- |
| 697.13 | 1.23 | 11.6 | 4.74 | -- | -3.16 | -- | 4.29 | 0.799 | -- | 0.01198 | 3530 | 0.957 | -- |
| 522.1 | 1.07 | 11.7 | 4.6 | 2.13 | -- | 0.256 | -- | 1.03 | 21.9 | -- | -- | -- | -- |
| 522.35 | 1.07 | 11.7 | 4.59 | 2.13 | -- | -- | -- | 1.03 | 21.9 | -- | -- | -- | -- |
| 522.35 | 1.06 | 11.6 | 4.59 | -- | -2.13 | -- | -- | 1.03 | -- | -0.4365 | 2043 | 1.17 | -- |
| 699.07 | 1.23 | 12.1 | -- | 2.06 | -2.55 | -- | -- | -0.332 | 21.5 | 0.5 | 47520 | 9.4e-08 | -- |
| 792.84 | 1.32 | 11.6 | 4.62 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 1078.77 | 1.54 | 11.8 | -- | 2.14 | -- | -- | -- | 0.522 | 22 | -- | -- | -- | -- |
| 928.92 | 1.42 | 12 | -- | -- | -2.77 | -- | -- | -0.708 | -- | 0.4484 | 47520 | 5.48e-08 | -- |
| 1355.24 | 1.72 | 11.7 | -- | -- | -- | -- | -- | 0.521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 456.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 2 | 456.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 5 | 457.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 7 | 459.14 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 8 | 459.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 13 | 461.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 16 | 461.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 17 | 461.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 20 | 462.15 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 21 | 462.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 29 | 463.67 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 37 | 464.12 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 41 | 464.22 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 42 | 464.22 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 51 | 464.74 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 61 | 465.34 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 64 | 465.57 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 100 | 466.30 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 101 | 466.32 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 107 | 466.40 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 131 | 466.65 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 137 | 466.73 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 150 | 466.81 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 168 | 466.90 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 174 | 466.92 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 195 | 466.97 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 197 | 466.98 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 218 | 467.08 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 249 | 467.16 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 277 | 467.22 | temperature | 25.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 301 | 467.28 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 310 | 467.30 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 343 | 467.36 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 417 | 467.52 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 427 | 467.54 | temperature | 25.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 453 | 467.58 | temperature | 25.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 477 | 467.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 479 | 467.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 499 | 467.62 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 513 | 467.63 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 545 | 467.66 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 7 | 19 |
| 597 | 467.69 | temperature | 25.0 | 43200 | > th | dose dependent | no | NA | NA |
| 671 | 467.77 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 691 | 467.80 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 707 | 467.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 711 | 467.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 816 | 467.97 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 849 | 468.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 853 | 468.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 905 | 468.09 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 998 | 468.22 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 1 |