Os06g0581000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nitrate transporter NTL1.
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Os06g0581000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nitrate transporter NTL1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.97 | 0.319 | 14 | 0.918 | 0.461 | -0.572 | 0.346 | 0.512 | 0.33 | 21.4 | 10 | 1450 | -- | -- |
| 46.52 | 0.318 | 14 | 0.888 | 0.464 | -0.583 | 0.344 | -- | 0.343 | 21.4 | 10.01 | 1450 | -- | -- |
| 46.4 | 0.317 | 14 | 0.917 | 0.461 | -0.572 | -- | 0.534 | 0.33 | 21.5 | 10.01 | 1450 | -- | -- |
| 46.92 | 0.319 | 14 | 0.841 | 0.473 | -0.57 | -- | -- | 0.339 | 21.6 | 10 | 1447 | -- | -- |
| 56.26 | 0.349 | 14 | 0.919 | -- | -0.724 | -- | 0.455 | 0.328 | -- | 10 | 1595 | -- | -- |
| 55.38 | 0.349 | 14 | 0.659 | 0.458 | -- | 0.293 | -- | 0.13 | 21.3 | -- | -- | -- | -- |
| 55.68 | 0.349 | 14 | 0.648 | 0.455 | -- | -- | -- | 0.129 | 21.4 | -- | -- | -- | -- |
| 56.6 | 0.35 | 14 | 0.782 | -- | -0.677 | -- | -- | 0.318 | -- | 10 | 1586 | -- | -- |
| 61.25 | 0.365 | 14 | -- | 0.495 | -0.422 | -- | -- | 0.192 | 21.3 | 19.9 | 1537 | -- | -- |
| 67.83 | 0.385 | 14 | 0.65 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 66.73 | 0.382 | 14.1 | -- | 0.456 | -- | -- | -- | 0.0567 | 21.5 | -- | -- | -- | -- |
| 68.63 | 0.387 | 14.1 | -- | -- | -0.361 | -- | -- | 0.0472 | -- | 19.9 | 1537 | -- | -- |
| 78.99 | 0.415 | 14.1 | -- | -- | -- | -- | -- | 0.0552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 3 | 43.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 27 | 44.57 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 30 | 44.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 42 | 44.89 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 60 | 45.08 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 83 | 45.26 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 102 | 45.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 115 | 45.45 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 287 | 45.99 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 370 | 46.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 391 | 46.03 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 405 | 46.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 428 | 46.15 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 433 | 46.18 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 435 | 46.18 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 442 | 46.20 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 444 | 46.20 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 452 | 46.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 457 | 46.24 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 459 | 46.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 476 | 46.28 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 16 |
| 482 | 46.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 483 | 46.29 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 489 | 46.30 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 500 | 46.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 516 | 46.31 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 552 | 46.38 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 595 | 46.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 728 | 46.67 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 729 | 46.67 | humidity | 90 | 30 | < th | dose dependent | rect. | 23 | 17 |
| 740 | 46.69 | humidity | 90 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 742 | 46.70 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 745 | 46.70 | humidity | 90 | 30 | < th | dose dependent | rect. | 21 | 19 |
| 754 | 46.72 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 840 | 46.83 | humidity | 70 | 1440 | > th | dose independent | sin | 4 | NA |
| 875 | 46.86 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 877 | 46.86 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 900 | 46.88 | humidity | 90 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 912 | 46.90 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |