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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0580000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0367) R2 : 0.0128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.188 (0.0772) R2dN8 : 0.0165 R2N8 : 0.0128
σ : 0.691
deviance : 219
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.4 0.677 2.89 -0.00997 0.179 0.388 0.875 -2.71 0.212 12.4 50 30 -- --
211.89 0.678 2.89 -0.044 0.188 0.53 0.479 -- 0.201 11.9 45.19 32 -- --
202.62 0.663 2.89 -0.0109 0.231 1.49 -- -4.47 0.198 10.7 70.77 31 -- --
202.62 0.663 2.9 -0.00192 0.23 3.53 -- -- 0.198 10.7 70.02 65 -- --
205.87 0.668 2.9 -0.0142 -- 1.61 -- -4.43 0.197 -- 70.91 46 -- --
214.39 0.686 2.9 -0.0786 0.252 -- 0.359 -- 0.181 11.4 -- -- -- --
214.87 0.686 2.9 -0.0653 0.254 -- -- -- 0.181 10.8 -- -- -- --
205.87 0.668 2.9 -0.00448 -- 3.63 -- -- 0.197 -- 70.8 67 -- --
202.62 0.663 2.9 -- 0.23 3.53 -- -- 0.198 10.7 70.13 65 -- --
218.87 0.691 2.91 -0.0706 -- -- -- -- 0.18 -- -- -- -- --
214.98 0.686 2.9 -- 0.255 -- -- -- 0.189 10.9 -- -- -- --
205.87 0.668 2.9 -- -- 3.63 -- -- 0.198 -- 72.15 63 -- --
219 0.691 2.9 -- -- -- -- -- 0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.22 wind 5.0 90 > th dose dependent rect. 12 1
2 198.29 wind 5.0 90 > th dose independent rect. 12 1
4 199.48 wind 1.0 90 < th dose dependent rect. 24 1
10 202.27 wind 1.0 90 < th dose independent rect. 24 1
15 204.46 wind 1.0 90 < th dose independent rect. 24 3
19 204.59 humidity 90.0 30 > th dose dependent rect. 2 1
20 204.71 temperature 30.0 30 < th dose independent rect. 3 23
24 204.83 temperature 20.0 10 < th dose dependent rect. 22 1
28 205.03 wind 3.0 10 < th dose independent rect. 2 1
30 205.18 temperature 20.0 90 < th dose independent rect. 20 1
36 205.27 temperature 20.0 10 > th dose independent rect. 2 1
48 205.42 atmosphere 1010.0 30 < th dose dependent rect. 2 1
49 205.53 humidity 90.0 10 > th dose independent rect. 2 1
53 205.65 wind 1.0 90 < th dose dependent rect. 24 3
68 205.90 wind 1.0 30 > th dose independent rect. 2 1
71 205.93 wind 5.0 10 < th dose dependent rect. 2 1
73 205.96 temperature 15.0 10 > th dose dependent rect. 2 1
86 206.07 temperature 10.0 30 > th dose independent rect. 2 1
88 206.07 temperature 25.0 30 < th dose independent rect. 2 1
90 206.07 humidity 50.0 30 > th dose independent rect. 2 1
93 206.07 atmosphere 995.0 30 > th dose independent rect. 2 1
95 206.07 atmosphere 1010.0 30 < th dose independent rect. 2 1
97 206.07 radiation 1.0 30 < th dose independent rect. 2 1
102 206.07 precipitation 0.1 30 < th dose independent rect. 2 1
103 206.07 temperature 10.0 30 > th dose independent rect. 3 23
105 206.07 radiation 1.0 30 < th dose dependent rect. 2 1
110 206.07 precipitation 0.1 30 < th dose dependent rect. 2 1
113 206.14 temperature 30.0 30 < th dose dependent rect. 2 1
145 206.28 atmosphere 995.0 30 > th dose dependent rect. 2 1
164 206.62 radiation 40.0 30 < th dose independent rect. 3 22
179 207.00 radiation 30.0 90 > th dose independent rect. 12 1
194 207.25 radiation 40.0 10 > th dose dependent rect. 12 1
215 207.44 wind 5.0 90 > th dose independent rect. 20 18
216 207.44 atmosphere 995.0 10 > th dose independent rect. 3 23
217 207.45 humidity 90.0 720 > th dose dependent rect. 19 3
222 207.53 humidity 80.0 1440 > th dose dependent rect. 12 1
232 207.60 temperature 20.0 1440 < th dose dependent rect. 12 5
237 207.62 humidity 60.0 270 > th dose dependent rect. 17 10
246 207.69 radiation 1.0 14400 < th dose dependent rect. 3 1
248 207.71 humidity 80.0 1440 > th dose independent rect. 12 1
313 207.95 wind 1.0 90 < th dose independent rect. 14 13
316 207.96 atmosphere 1005.0 10 > th dose dependent rect. 12 2
325 208.03 humidity 90.0 1440 > th dose dependent rect. 16 6
330 208.04 radiation 10.0 90 > th dose dependent rect. 12 1
340 208.08 atmosphere 1000.0 90 > th dose dependent rect. 12 1
346 208.10 wind 1.0 90 < th dose independent rect. 11 16
347 208.10 wind 3.0 90 > th dose dependent rect. 20 18
349 208.13 temperature 20.0 1440 < th dose independent rect. 13 1
352 208.13 radiation 40.0 30 > th dose dependent sin 18 NA
353 208.13 temperature 20.0 1440 < th dose dependent rect. 13 1
394 208.20 humidity 90.0 1440 > th dose independent rect. 19 2
397 208.22 wind 7.0 90 < th dose independent rect. 13 23
399 208.23 atmosphere 1005.0 720 < th dose independent rect. 1 1
400 208.24 humidity 90.0 10 < th dose independent rect. 16 16
403 208.25 wind 5.0 90 > th dose independent rect. 23 15
409 208.26 humidity 90.0 270 < th dose independent rect. 13 19
411 208.27 temperature 20.0 1440 < th dose independent rect. 12 5
413 208.27 humidity 70.0 1440 > th dose dependent rect. 16 1
416 208.28 temperature 30.0 90 < th dose independent rect. 12 1
421 208.29 radiation 30.0 720 > th dose independent rect. 13 2
423 208.30 atmosphere 1010.0 90 < th dose independent rect. 3 8
429 208.31 humidity 80.0 1440 < th dose independent rect. 12 1
434 208.32 radiation 30.0 90 < th dose independent rect. 15 22
447 208.35 wind 9.0 1440 < th dose independent rect. 3 1
448 208.35 temperature 10.0 1440 > th dose independent rect. 3 1
451 208.35 temperature 30.0 1440 < th dose independent rect. 3 1
455 208.35 humidity 50.0 1440 > th dose independent rect. 3 1
464 208.35 atmosphere 995.0 1440 > th dose independent rect. 3 1
466 208.35 radiation 1.0 1440 < th dose independent rect. 3 1
487 208.35 temperature 10.0 1440 > th dose independent rect. 4 23
492 208.35 radiation 1.0 1440 < th dose dependent rect. 3 1
508 208.39 humidity 90.0 10 > th dose independent rect. 21 6
529 208.41 humidity 90.0 10 > th dose dependent rect. 1 22
536 208.43 humidity 90.0 270 > th dose dependent rect. 17 9
557 208.48 radiation 30.0 90 < th dose independent rect. 16 20
560 208.48 radiation 20.0 720 > th dose dependent rect. 13 2
562 208.50 humidity 80.0 1440 < th dose independent rect. 15 2
564 208.50 radiation 30.0 90 < th dose independent rect. 3 9
577 208.54 radiation 40.0 30 < th dose independent rect. 7 13
580 208.55 humidity 90.0 1440 > th dose independent rect. 16 6
581 208.55 atmosphere 1010.0 90 < th dose independent rect. 16 19
582 208.55 temperature 25.0 10 > th dose independent rect. 13 23
586 208.56 humidity 90.0 270 > th dose dependent rect. 13 13
597 208.59 humidity 80.0 1440 < th dose independent rect. 14 6
603 208.60 humidity 80.0 1440 > th dose independent rect. 16 1
610 208.61 temperature 20.0 1440 > th dose independent rect. 15 1
677 208.64 radiation 40.0 30 > th dose dependent no NA NA
880 208.66 wind 3.0 90 > th dose dependent rect. 1 13
892 208.68 precipitation 0.1 30 < th dose independent rect. 3 23
895 208.68 precipitation 0.1 30 < th dose dependent rect. 3 23
898 208.69 radiation 40.0 10 < th dose independent rect. 6 19
903 208.70 temperature 20.0 1440 > th dose independent rect. 12 4
926 208.72 radiation 20.0 720 > th dose dependent rect. 13 19
933 208.73 radiation 40.0 30 < th dose independent rect. 3 17
934 208.73 atmosphere 1010.0 30 < th dose independent rect. 14 22
938 208.74 atmosphere 1005.0 270 > th dose independent rect. 5 9
965 208.76 humidity 90.0 1440 < th dose independent rect. 19 2
982 208.79 wind 1.0 30 > th dose independent rect. 13 23
990 208.80 atmosphere 1005.0 270 < th dose independent rect. 23 12
995 208.81 wind 3.0 90 < th dose dependent rect. 14 13