Os06g0579600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0579600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.22 | 0.572 | 7.53 | 3.68 | 2.23 | -3.76 | -1.15 | 2.71 | 0.811 | 13 | 16.32 | 277 | -- | -- |
| 153 | 0.576 | 7.59 | 3.19 | 2.27 | -4.05 | -0.839 | -- | 0.727 | 13 | 11.09 | 264 | -- | -- |
| 153.46 | 0.577 | 7.54 | 3.54 | 2.23 | -3.94 | -- | 2.33 | 0.807 | 13 | 15.54 | 277 | -- | -- |
| 155.32 | 0.58 | 7.59 | 3.21 | 2.24 | -4.03 | -- | -- | 0.686 | 13 | 10.97 | 275 | -- | -- |
| 246.54 | 0.731 | 7.55 | 3.92 | -- | -4.15 | -- | 2.34 | 0.878 | -- | 15.7 | 848 | -- | -- |
| 323.22 | 0.843 | 7.7 | 2.39 | 1.87 | -- | -0.972 | -- | 0.115 | 10.9 | -- | -- | -- | -- |
| 327.19 | 0.847 | 7.7 | 2.35 | 1.87 | -- | -- | -- | 0.111 | 10.9 | -- | -- | -- | -- |
| 251.85 | 0.739 | 7.6 | 3.46 | -- | -4.23 | -- | -- | 0.775 | -- | 14.9 | 843 | -- | -- |
| 399.43 | 0.931 | 7.71 | -- | 1.97 | -2.49 | -- | -- | 0.146 | 12.2 | 11.06 | 289 | -- | -- |
| 545.14 | 1.09 | 7.75 | 2.31 | -- | -- | -- | -- | 0.0986 | -- | -- | -- | -- | -- |
| 472.41 | 1.02 | 7.76 | -- | 1.86 | -- | -- | -- | -0.15 | 10.8 | -- | -- | -- | -- |
| 514.56 | 1.06 | 7.73 | -- | -- | -2.38 | -- | -- | 0.19 | -- | 21.8 | 817 | -- | -- |
| 685.61 | 1.22 | 7.81 | -- | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.42 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 12 | 144.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 13 | 144.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 17 | 144.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 45 | 144.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 58 | 144.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 68 | 144.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 69 | 144.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 74 | 144.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 77 | 144.93 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 79 | 144.94 | radiation | 1 | 14400 | > th | dose independent | sin | 17 | NA |
| 107 | 145.25 | radiation | 1 | 14400 | < th | dose independent | sin | 15 | NA |
| 166 | 145.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 172 | 145.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 176 | 145.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 179 | 145.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 216 | 145.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 336 | 146.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 350 | 146.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 21 |
| 362 | 146.59 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 401 | 146.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 416 | 146.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 445 | 146.91 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 500 | 146.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 507 | 147.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 534 | 147.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 20 |
| 555 | 147.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 7 |
| 576 | 147.53 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 585 | 147.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 588 | 147.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 612 | 147.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 661 | 147.79 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 734 | 148.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 771 | 148.59 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 789 | 148.84 | radiation | 1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 793 | 148.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 797 | 148.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 804 | 148.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 860 | 149.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 890 | 149.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 958 | 149.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 14 |