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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0579400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.56 (0.0415) R2 : 0.72
β1 : 3.87 (0.156) R2dD : 0.427 R2D : 0.2
β2 : 2.62 (0.103) R2dC : 0.447 R2C : 0.208
β3 : -3.73 (0.202) R2dE : 0.267 R2E : -0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.756 (0.0919) R2dN8 : 0.0615 R2N8 : -0.0667
σ : 0.765
deviance : 269.89
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_____
C
peak time of C : 12.7
E
wheather : temperature
threshold : 15.48
memory length : 227
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.47 0.757 5.47 4.63 2.53 -3.34 -0.325 4.33 0.975 12.8 18.93 280 -- --
270.3 0.766 5.58 3.85 2.62 -3.4 0.177 -- 0.727 12.7 16.86 228 -- --
259.73 0.751 5.48 4.6 2.52 -3.4 -- 4.24 0.961 12.8 18.19 282 -- --
269.89 0.765 5.56 3.87 2.62 -3.73 -- -- 0.756 12.7 15.48 227 -- --
403.04 0.935 5.44 5.19 -- -3.67 -- 5.02 1.16 -- 20.49 858 -- --
427.59 0.969 5.67 3.06 2.18 -- -0.197 -- 0.205 11 -- -- -- --
427.76 0.969 5.67 3.05 2.18 -- -- -- 0.205 11 -- -- -- --
417.25 0.951 5.58 4.11 -- -4.12 -- -- 0.857 -- 15.98 858 -- --
618.18 1.16 5.68 -- 2.63 -1.85 -- -- 0.136 11.7 19.9 92 -- --
724.22 1.26 5.72 3 -- -- -- -- 0.188 -- -- -- -- --
673.18 1.21 5.74 -- 2.16 -- -- -- -0.135 10.9 -- -- -- --
804.62 1.32 5.72 -- -- -2.28 -- -- 0.193 -- 21.7 830 -- --
962.06 1.45 5.8 -- -- -- -- -- -0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.11 temperature 30 30 < th dose dependent rect. 19 23
3 258.62 temperature 20 1440 > th dose dependent rect. 21 12
7 259.11 temperature 15 270 > th dose dependent rect. 6 23
9 259.19 temperature 20 270 > th dose dependent rect. 14 23
10 259.43 temperature 30 270 < th dose dependent rect. 11 23
25 260.45 temperature 20 1440 > th dose dependent sin 9 NA
46 261.30 temperature 30 1440 < th dose dependent rect. 2 7
61 261.59 temperature 30 1440 < th dose dependent rect. 3 5
63 261.59 temperature 30 1440 < th dose dependent rect. 21 12
64 261.62 temperature 20 270 > th dose dependent no NA NA
96 262.00 temperature 20 270 > th dose dependent rect. 11 23
107 262.14 temperature 30 30 < th dose dependent rect. 5 23
180 263.21 temperature 30 10 < th dose dependent rect. 13 23
192 263.39 temperature 20 1440 > th dose dependent rect. 21 4
195 263.43 temperature 30 1440 < th dose dependent sin 9 NA
250 264.23 temperature 20 1440 > th dose dependent rect. 21 2
270 264.53 temperature 15 270 > th dose dependent rect. 24 23
300 264.78 temperature 20 270 > th dose dependent rect. 3 23
316 265.01 temperature 30 270 < th dose dependent no NA NA
331 265.16 temperature 30 30 < th dose dependent no NA NA
333 265.16 temperature 30 270 < th dose dependent rect. 3 23
388 265.73 temperature 30 30 < th dose dependent rect. 15 23
424 266.09 temperature 30 30 < th dose dependent rect. 23 23
625 268.05 temperature 30 1440 < th dose dependent rect. 21 4
647 268.25 temperature 30 30 < th dose dependent rect. 17 23
680 268.47 temperature 30 1440 < th dose dependent rect. 21 2
783 269.37 temperature 20 720 > th dose dependent rect. 20 23
955 270.94 temperature 30 10 < th dose dependent rect. 9 23