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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0579200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.85 (0.0693) R2 : 0.688
β1 : 7.57 (0.26) R2dD : 0.633 R2D : 0.351
β2 : 1.37 (0.171) R2dC : 0.0456 R2C : -0.0205
β3 : 2.31 (0.185) R2dE : 0.113 R2E : -0.0832
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.33 (0.149) R2dN8 : 0.227 R2N8 : 0.0229
σ : 1.29
deviance : 769.18
__
_____
C
peak time of C : 21.3
E
wheather : temperature
threshold : 29.29
memory length : 1260
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
757.09 1.29 5.75 8.82 1.39 2.84 1.64 -5.14 2.33 21.3 29.6 1257 -- --
762.04 1.29 5.82 7.83 1.38 2.36 1.06 -- 2.39 21.2 29.2 1258 -- --
763.92 1.29 5.72 8.8 1.39 2.83 -- -5.01 2.5 21.4 29.43 1257 -- --
769.18 1.29 5.85 7.57 1.37 2.31 -- -- 2.33 21.3 29.29 1260 -- --
871.04 1.37 5.67 8.78 -- 2.64 -- -4.81 2.55 -- 29.4 1309 -- --
1014.25 1.49 5.9 6.87 1.22 -- 1.62 -- 2.09 20.3 -- -- -- --
1022.37 1.5 5.9 6.82 1.22 -- -- -- 2.09 20.3 -- -- -- --
871.35 1.37 5.82 7.54 -- 2.12 -- -- 2.26 -- 29.3 1356 -- --
2193.03 2.18 6.07 -- 1.22 1.03 -- -- 1.36 20.6 29.4 1268 -- --
1104.83 1.55 5.87 6.81 -- -- -- -- 2.07 -- -- -- -- --
2247.55 2.22 6.07 -- 1.19 -- -- -- 1.33 20.7 -- -- -- --
2279.73 2.22 6.08 -- -- 1.18 -- -- 1.18 -- 35.3 1537 -- --
2328.06 2.25 6.04 -- -- -- -- -- 1.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 724.20 wind 9.0 43200 > th dose dependent sin 13 NA
2 725.38 wind 9.0 43200 > th dose dependent rect. 17 14
3 729.45 wind 9.0 43200 > th dose independent rect. 17 15
7 732.87 wind 9.0 43200 > th dose independent sin 12 NA
11 734.69 wind 9.0 43200 > th dose independent rect. 18 11
17 737.40 wind 9.0 43200 < th dose independent rect. 17 15
18 737.70 wind 9.0 43200 > th dose dependent rect. 20 1
23 740.06 wind 9.0 43200 < th dose independent sin 12 NA
25 740.28 wind 9.0 43200 < th dose independent rect. 18 11
26 740.41 wind 9.0 43200 < th dose independent rect. 18 13
28 740.53 wind 9.0 43200 > th dose dependent rect. 17 7
29 740.60 precipitation 0.1 43200 > th dose dependent rect. 17 1
41 742.65 wind 9.0 43200 > th dose dependent rect. 14 18
42 742.75 precipitation 0.1 43200 < th dose independent rect. 17 1
43 742.75 precipitation 0.1 43200 < th dose dependent rect. 17 1
44 743.25 wind 9.0 43200 > th dose independent rect. 18 6
45 743.31 wind 9.0 43200 < th dose independent rect. 18 6
46 743.48 precipitation 0.1 43200 > th dose independent rect. 17 1
48 744.31 wind 7.0 43200 < th dose independent rect. 20 1
52 745.63 wind 7.0 43200 > th dose dependent rect. 14 20
57 746.14 wind 7.0 43200 > th dose independent rect. 20 1
63 747.75 wind 9.0 43200 > th dose dependent rect. 20 9
66 748.33 wind 7.0 43200 > th dose dependent rect. 18 3
72 749.40 wind 9.0 43200 > th dose dependent rect. 20 4
114 753.65 wind 5.0 43200 > th dose independent rect. 14 20
115 753.86 wind 5.0 43200 < th dose independent rect. 14 20
116 753.92 wind 9.0 43200 > th dose independent rect. 14 20
119 754.13 wind 9.0 43200 < th dose independent rect. 14 20
123 754.43 wind 5.0 43200 < th dose independent rect. 15 18
131 755.13 wind 5.0 43200 > th dose independent rect. 15 18
141 755.70 radiation 1.0 43200 < th dose dependent rect. 19 9
149 756.46 wind 9.0 43200 < th dose independent rect. 18 4
161 757.47 wind 9.0 43200 > th dose independent rect. 20 8
162 757.48 wind 9.0 43200 > th dose independent rect. 20 5
165 757.60 atmosphere 1000.0 43200 < th dose independent rect. 11 1
166 757.74 atmosphere 1000.0 43200 > th dose independent rect. 11 1
170 757.95 wind 9.0 43200 > th dose dependent sin 17 NA
171 757.99 radiation 1.0 43200 < th dose dependent rect. 19 7
179 758.75 radiation 1.0 43200 < th dose dependent rect. 1 1
194 759.96 atmosphere 1000.0 43200 < th dose dependent rect. 11 1
221 761.10 atmosphere 1000.0 43200 < th dose dependent rect. 11 5
231 761.44 atmosphere 1000.0 43200 < th dose dependent rect. 14 1
246 761.91 wind 7.0 43200 > th dose dependent rect. 17 23
262 762.70 wind 7.0 43200 > th dose dependent rect. 23 22
268 762.91 wind 9.0 43200 < th dose independent rect. 20 8
273 763.12 wind 5.0 43200 < th dose independent sin 13 NA
277 763.25 wind 7.0 43200 > th dose dependent rect. 2 19
299 763.73 wind 7.0 43200 > th dose dependent rect. 6 22
308 763.94 wind 5.0 43200 > th dose independent sin 13 NA
326 764.31 wind 7.0 43200 > th dose dependent rect. 6 18
328 764.33 wind 7.0 43200 > th dose dependent rect. 6 15
330 764.36 wind 9.0 43200 < th dose independent rect. 20 5
340 764.51 wind 7.0 43200 > th dose dependent no NA NA
358 764.78 wind 5.0 43200 < th dose independent rect. 2 22
369 764.95 wind 9.0 43200 < th dose independent rect. 17 21
382 765.16 wind 5.0 43200 > th dose independent rect. 2 22
393 765.31 wind 7.0 43200 > th dose dependent rect. 20 23
394 765.32 wind 5.0 43200 < th dose independent rect. 22 23
420 765.59 wind 5.0 43200 < th dose independent no NA NA
421 765.60 wind 5.0 43200 < th dose independent rect. 4 23
433 765.75 wind 5.0 43200 > th dose independent rect. 22 23
471 766.11 wind 9.0 43200 > th dose independent rect. 17 21
481 766.21 wind 5.0 43200 > th dose independent rect. 9 23
510 766.42 temperature 25.0 1440 > th dose dependent rect. 13 12
514 766.46 temperature 25.0 1440 > th dose dependent rect. 13 1
515 766.47 wind 5.0 43200 > th dose independent no NA NA
604 767.48 radiation 1.0 43200 < th dose dependent rect. 22 6
607 767.54 temperature 25.0 1440 > th dose dependent rect. 13 19
648 767.92 temperature 25.0 720 > th dose dependent rect. 17 16
690 768.46 temperature 25.0 1440 > th dose dependent sin 16 NA
700 768.59 wind 5.0 43200 < th dose independent rect. 17 23
737 769.04 temperature 20.0 1440 > th dose dependent rect. 17 1
741 769.12 radiation 1.0 43200 < th dose dependent rect. 22 4
784 769.61 wind 5.0 43200 > th dose independent rect. 17 23
820 770.01 temperature 25.0 1440 > th dose dependent rect. 13 6