FiT-DB / Search/ Help/ Sample detail

Os06g0579100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.1 (0.0189) R2 : 0.66
β1 : 1.22 (0.069) R2dD : 0.24 R2D : 0.171
β2 : 0.993 (0.0448) R2dC : 0.368 R2C : 0.348
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.461 (0.0402) R2dN8 : 0.131 R2N8 : 0.0438
σ : 0.355
deviance : 57.31
__
_____
C
peak time of C : 23.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.75 0.341 15 1.35 1.03 1.17 0.47 -2.41 0.438 22.9 50.05 275 -- --
53.39 0.34 15.1 1.33 1.02 0.629 0.417 -- 0.436 22.8 51 298 -- --
53.67 0.341 15.1 1.32 1.02 1.13 -- -2.19 0.437 22.9 50.06 267 -- --
54.05 0.342 15.1 1.27 1.01 0.641 -- -- 0.435 22.9 51.76 275 -- --
113.66 0.497 15 1.25 -- 0.385 -- 0.324 0.417 -- 59.49 52 -- --
56.5 0.352 15.1 1.23 0.995 -- 0.435 -- 0.463 23.2 -- -- -- --
57.31 0.355 15.1 1.22 0.993 -- -- -- 0.461 23.2 -- -- -- --
88.4 0.438 15 1.28 -- 0.526 -- -- 0.45 -- 78.93 7 -- --
63.17 0.37 15.1 -- 0.988 1.09 -- -- 0.153 23.2 56.79 47520 -- --
118.96 0.51 15 1.24 -- -- -- -- 0.47 -- -- -- -- --
96.22 0.459 15.1 -- 1.01 -- -- -- 0.326 23.3 -- -- -- --
124.21 0.519 15.1 -- -- 1.13 -- -- 0.154 -- 56.24 47520 -- --
159.48 0.589 15.1 -- -- -- -- -- 0.333 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.82 wind 1 4320 > th dose independent rect. 6 1
2 51.83 humidity 80 30 < th dose dependent rect. 16 19
3 51.85 wind 1 4320 < th dose independent rect. 6 1
9 52.10 humidity 70 30 < th dose independent rect. 16 19
11 52.18 wind 1 14400 > th dose independent rect. 24 5
14 52.27 wind 1 14400 < th dose independent rect. 24 5
16 52.28 wind 1 4320 < th dose dependent rect. 6 1
18 52.30 temperature 20 10 > th dose independent rect. 20 8
21 52.36 atmosphere 1005 30 > th dose dependent rect. 3 8
28 52.40 temperature 20 90 > th dose independent rect. 19 9
35 52.48 humidity 80 10 < th dose dependent sin 11 NA
36 52.49 humidity 60 270 < th dose independent rect. 16 1
50 52.57 atmosphere 1005 720 > th dose independent rect. 23 1
52 52.57 humidity 60 270 < th dose dependent rect. 16 1
55 52.60 wind 1 14400 < th dose independent rect. 21 10
64 52.62 wind 1 14400 < th dose independent rect. 16 15
70 52.64 wind 9 14400 < th dose dependent rect. 8 1
76 52.66 radiation 1 1440 > th dose independent rect. 11 1
81 52.67 wind 1 14400 > th dose independent rect. 16 15
83 52.67 wind 1 14400 > th dose dependent rect. 8 1
85 52.67 radiation 10 4320 > th dose dependent rect. 17 13
88 52.68 radiation 10 4320 > th dose dependent rect. 17 1
111 52.70 humidity 70 90 < th dose independent rect. 16 15
112 52.70 temperature 20 10 > th dose independent rect. 11 17
136 52.73 wind 3 14400 > th dose dependent rect. 6 4
141 52.74 temperature 30 270 > th dose dependent rect. 16 1
143 52.74 wind 1 14400 < th dose dependent rect. 24 5
145 52.74 humidity 80 90 < th dose dependent rect. 16 15
146 52.75 humidity 50 270 > th dose independent no NA NA
151 52.75 wind 5 14400 > th dose dependent rect. 19 1
155 52.76 humidity 70 10 < th dose independent rect. 16 16
161 52.76 humidity 90 10 < th dose dependent rect. 17 14
162 52.77 wind 5 14400 > th dose independent rect. 7 3
167 52.77 humidity 50 270 < th dose independent rect. 16 22
169 52.77 humidity 80 90 < th dose dependent rect. 16 12
172 52.77 humidity 50 270 < th dose dependent rect. 16 18
173 52.78 wind 1 14400 < th dose independent sin 11 NA
176 52.78 humidity 70 10 < th dose independent rect. 16 4
230 52.79 humidity 70 10 > th dose independent sin 11 NA
232 52.79 wind 5 14400 < th dose independent rect. 7 3
233 52.79 wind 1 1440 > th dose independent rect. 3 4
238 52.79 humidity 60 270 < th dose dependent rect. 12 22
239 52.79 humidity 50 270 < th dose dependent rect. 16 22
240 52.80 wind 1 14400 > th dose independent sin 11 NA
264 52.81 wind 7 14400 < th dose independent rect. 18 2
284 52.82 humidity 50 270 > th dose independent sin 11 NA
285 52.82 humidity 50 270 > th dose independent sin 3 NA
286 52.82 humidity 50 270 < th dose independent sin 11 NA
287 52.82 humidity 50 270 < th dose independent sin 18 NA
293 52.82 humidity 50 270 < th dose independent no NA NA
296 52.82 humidity 50 270 < th dose independent rect. 11 7
454 52.82 humidity 50 270 < th dose dependent sin 11 NA
455 52.82 humidity 60 270 < th dose dependent sin 13 NA
465 52.82 humidity 50 270 < th dose dependent no NA NA
468 52.82 humidity 50 270 < th dose dependent rect. 12 6
678 52.83 wind 1 43200 < th dose independent rect. 10 22
710 52.83 humidity 90 10 < th dose dependent rect. 12 23
782 52.84 atmosphere 1005 10 > th dose dependent rect. 24 11
838 52.85 temperature 30 270 > th dose dependent sin 14 NA
882 52.86 humidity 60 270 > th dose independent rect. 12 15
887 52.86 wind 1 43200 > th dose independent rect. 10 22
890 52.86 wind 1 43200 < th dose dependent rect. 12 1
891 52.86 wind 3 14400 < th dose dependent rect. 3 3
895 52.86 wind 1 14400 < th dose dependent rect. 16 15
899 52.87 wind 5 4320 < th dose independent rect. 9 1
968 52.89 temperature 20 10 > th dose independent rect. 22 6
998 52.89 wind 1 43200 < th dose independent rect. 16 21