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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0578200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0428) R2 : 0.669
β1 : -1.2 (0.157) R2dD : 0.0452 R2D : 0.056
β2 : 4.36 (0.21) R2dC : 1.41 R2C : 0.166
β3 : -3.05 (0.297) R2dE : 0.36 R2E : -0.821
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.688 (0.0931) R2dN8 : 0.0592 R2N8 : 0.0576
σ : 0.773
deviance : 275.65
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_____
C
peak time of C : 10.9
E
wheather : temperature
threshold : 13.72
memory length : 344
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 22.4
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
263.83 0.763 4.26 -0.577 3.25 -2.13 -1.84 4.09 -0.511 11 20.42 369 23 --
273.04 0.77 4.32 -1.14 3.68 -2.36 -0.841 -- -0.702 11.1 16.91 341 22.2 --
275.16 0.773 4.26 -0.673 3.15 -1.89 -- 3.44 -0.523 10.8 21.19 412 23.9 --
275.65 0.773 4.3 -1.2 4.36 -3.05 -- -- -0.688 10.9 13.72 344 22.4 --
363.36 0.888 4.31 -0.313 -- -3.95 -- 0.95 -0.158 -- -11.88 2225 14 --
327.62 0.849 4.41 -1.56 2.45 -- -1.29 -- -0.988 10.6 -- -- -- --
334.48 0.856 4.41 -1.61 2.46 -- -- -- -0.992 10.6 -- -- -- --
319.39 0.832 4.43 -1.18 -- -3.29 -- -- -0.818 -- -109.4 2552 16.9 --
309.22 0.819 4.26 -- 4.52 -3.46 -- -- -0.51 11.2 14.55 344 22.2 --
706.15 1.24 4.47 -1.66 -- -- -- -- -1 -- -- -- -- --
403.07 0.939 4.37 -- 2.47 -- -- -- -0.813 10.6 -- -- -- --
353.63 0.876 4.39 -- -- -3.77 -- -- -0.623 -- -98.69 2635 17.5 --
778.62 1.3 4.43 -- -- -- -- -- -0.82 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.33 temperature 30 270 < th dose dependent rect. 4 9
2 261.05 temperature 30 270 < th dose dependent rect. 4 7
5 264.04 temperature 25 270 < th dose independent rect. 4 7
8 264.66 temperature 20 720 > th dose dependent rect. 1 8
18 267.16 temperature 20 270 > th dose dependent sin 4 NA
26 268.49 temperature 20 270 > th dose dependent rect. 24 16
40 270.04 temperature 30 270 < th dose dependent rect. 4 16
49 270.58 temperature 10 270 > th dose dependent sin 4 NA
88 272.83 temperature 30 270 < th dose dependent sin 3 NA
97 273.49 temperature 30 10 < th dose independent rect. 5 22
98 273.56 temperature 20 720 > th dose dependent sin 8 NA
99 273.57 temperature 25 270 < th dose independent rect. 7 1
129 274.94 temperature 20 270 > th dose dependent rect. 6 10
134 275.01 temperature 25 720 < th dose dependent rect. 4 1
135 275.03 temperature 20 720 < th dose independent rect. 4 1
144 275.29 temperature 10 720 > th dose dependent rect. 1 8
150 275.58 temperature 20 720 > th dose dependent rect. 3 1
189 276.66 temperature 25 270 > th dose independent rect. 3 13
190 276.66 temperature 10 720 > th dose dependent rect. 23 10
204 276.84 temperature 30 30 < th dose dependent rect. 7 5
236 277.54 temperature 10 720 > th dose dependent rect. 21 14
265 278.10 temperature 25 270 < th dose dependent rect. 7 1
271 278.18 temperature 20 720 > th dose dependent rect. 6 3
279 278.30 temperature 25 10 > th dose dependent rect. 1 18
285 278.38 temperature 25 10 > th dose dependent rect. 6 13
287 278.44 temperature 25 270 < th dose independent sin 2 NA
304 278.89 temperature 25 270 > th dose independent sin 2 NA
305 278.90 temperature 25 270 > th dose independent rect. 6 11
343 279.36 temperature 25 10 > th dose dependent rect. 23 20
365 279.67 temperature 30 720 < th dose dependent rect. 1 7
392 279.97 temperature 30 720 < th dose dependent rect. 24 9
458 280.81 temperature 30 720 < th dose dependent sin 7 NA
494 281.02 temperature 30 10 < th dose independent rect. 5 9
525 281.33 temperature 30 720 < th dose dependent rect. 23 12
609 282.08 temperature 30 720 < th dose dependent rect. 22 14
821 283.49 temperature 30 30 < th dose dependent rect. 5 22
841 283.62 temperature 25 10 > th dose dependent rect. 6 23
905 284.17 temperature 25 10 > th dose dependent no NA NA