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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0574600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0378) R2 : 0.000122
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0187 (0.0795) R2dN8 : 0.000157 R2N8 : 0.000122
σ : 0.711
deviance : 232.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.58 0.69 4.22 3.2 0.112 123 -0.179 254 0.0714 21.7 14.97 575 -- --
222.31 0.7 2.83 0.212 0.0916 2.11 -0.0193 -- 0.0545 21.4 14.97 575 -- --
215.63 0.684 4.2 3.17 0.113 123 -- 254 0.0714 21.5 14.95 569 -- --
218.88 0.689 2.82 0.214 0.087 2.03 -- -- 0.0632 21.4 14.6 629 -- --
216.35 0.685 4.19 3.15 -- 123 -- 254 0.0711 -- 14.95 567 -- --
230.63 0.712 2.84 0.12 0.117 -- -0.282 -- 0.0321 22.7 -- -- -- --
230.94 0.712 2.84 0.132 0.122 -- -- -- 0.0334 22.1 -- -- -- --
219.01 0.689 2.82 0.257 -- 2.49 -- -- 0.0655 -- 14.63 629 -- --
220.12 0.691 2.83 -- 0.0996 2.3 -- -- 0.036 21.6 14.68 629 -- --
231.83 0.711 2.83 0.134 -- -- -- -- 0.0336 -- -- -- -- --
231.4 0.712 2.84 -- 0.122 -- -- -- 0.0187 22.2 -- -- -- --
220.7 0.692 2.83 -- -- 2.33 -- -- 0.037 -- 14.68 629 -- --
232.3 0.711 2.84 -- -- -- -- -- 0.0187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.28 temperature 15 720 < th dose independent rect. 23 1
13 214.28 temperature 15 720 < th dose dependent rect. 23 1
90 217.51 temperature 15 720 < th dose dependent sin 13 NA
104 217.55 temperature 15 1440 > th dose independent rect. 12 5
132 217.64 temperature 15 720 > th dose independent sin 16 NA
143 217.64 temperature 15 720 < th dose dependent rect. 22 22
144 217.64 temperature 15 720 < th dose dependent rect. 19 23
232 217.69 temperature 15 720 < th dose dependent no NA NA
251 217.72 temperature 15 720 < th dose independent sin 16 NA
293 217.98 temperature 15 1440 > th dose independent rect. 17 7
342 218.41 temperature 15 1440 > th dose independent rect. 6 18
379 218.59 temperature 15 720 < th dose independent no NA NA
381 218.59 temperature 15 720 < th dose independent rect. 17 22
400 218.80 temperature 15 720 > th dose independent no NA NA
401 218.80 temperature 15 720 < th dose dependent rect. 1 20
413 218.88 temperature 15 720 < th dose independent rect. 21 23
425 218.92 temperature 15 270 > th dose independent rect. 19 10
476 219.23 temperature 15 720 < th dose dependent sin 1 NA
488 219.37 temperature 15 720 > th dose independent rect. 11 16
492 219.41 temperature 15 1440 > th dose independent rect. 15 9
502 219.52 temperature 15 720 < th dose independent sin 1 NA
503 219.53 temperature 15 1440 > th dose independent rect. 12 13
510 219.63 temperature 15 720 > th dose independent sin 13 NA
520 219.81 temperature 20 1440 < th dose independent rect. 12 1
523 219.84 temperature 15 1440 > th dose independent rect. 12 3
525 219.85 temperature 15 1440 > th dose independent rect. 6 15
527 219.88 temperature 15 1440 > th dose independent rect. 13 11
561 220.08 temperature 15 30 > th dose independent rect. 19 23
577 220.17 temperature 15 720 < th dose independent rect. 3 17
602 220.40 temperature 20 1440 > th dose independent rect. 12 1
628 220.58 humidity 50 720 < th dose dependent rect. 13 1
631 220.60 temperature 15 720 > th dose independent sin 1 NA
635 220.62 humidity 90 90 < th dose dependent rect. 10 6
638 220.66 temperature 15 1440 > th dose independent rect. 6 6
676 220.74 temperature 15 720 < th dose dependent rect. 4 14
683 220.80 radiation 1 1440 > th dose independent rect. 12 1
697 220.84 temperature 15 30 > th dose independent rect. 21 23
732 220.89 temperature 15 10 > th dose independent rect. 11 23
753 220.92 humidity 50 270 < th dose dependent rect. 17 21
775 220.97 temperature 15 720 > th dose independent sin 23 NA
781 220.97 humidity 50 270 < th dose independent rect. 17 21
790 221.02 temperature 15 1440 > th dose independent rect. 14 3
798 221.03 temperature 15 30 > th dose independent rect. 3 23
823 221.10 temperature 15 720 > th dose independent rect. 11 10
851 221.25 humidity 50 270 < th dose independent sin 8 NA
883 221.30 humidity 50 270 < th dose dependent sin 8 NA
931 221.45 humidity 50 90 < th dose independent sin 19 NA
932 221.45 temperature 15 720 < th dose independent rect. 4 11
964 221.49 atmosphere 1015 4320 > th dose dependent rect. 11 2
979 221.52 atmosphere 1015 4320 > th dose dependent rect. 14 1
988 221.53 wind 1 270 < th dose dependent rect. 21 1