Os06g0574500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2A.
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Os06g0574500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.52 | 0.228 | 11.1 | 0.223 | 0.258 | -0.353 | 0.112 | -1.28 | 0.209 | 0.853 | 22.2 | 1260 | -- | -- |
| 26.42 | 0.239 | 11 | 0.653 | 0.239 | -0.408 | -0.0338 | -- | 0.332 | 0.752 | 24.6 | 1521 | -- | -- |
| 23.57 | 0.226 | 11.1 | 0.225 | 0.257 | -0.353 | -- | -1.26 | 0.211 | 0.936 | 22.17 | 1267 | -- | -- |
| 26.38 | 0.239 | 11 | 0.638 | 0.3 | -0.371 | -- | -- | 0.35 | 0.733 | 24.36 | 1152 | -- | -- |
| 27.1 | 0.242 | 11.1 | 0.246 | -- | -0.363 | -- | -1.26 | 0.216 | -- | 22 | 1605 | -- | -- |
| 31.72 | 0.264 | 11 | 0.508 | 0.228 | -- | -0.0383 | -- | 0.195 | 0.846 | -- | -- | -- | -- |
| 31.72 | 0.264 | 11 | 0.509 | 0.228 | -- | -- | -- | 0.196 | 0.81 | -- | -- | -- | -- |
| 29.82 | 0.255 | 11 | 0.622 | -- | -0.259 | -- | -- | 0.303 | -- | 23.4 | 1603 | -- | -- |
| 36.43 | 0.281 | 11 | -- | 0.303 | -0.23 | -- | -- | 0.214 | 0.68 | 24.7 | 1065 | -- | -- |
| 34.96 | 0.276 | 11 | 0.518 | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
| 38.56 | 0.29 | 11.1 | -- | 0.236 | -- | -- | -- | 0.139 | 0.907 | -- | -- | -- | -- |
| 38.63 | 0.29 | 11 | -- | -- | -0.19 | -- | -- | 0.23 | -- | 24.7 | 1065 | -- | -- |
| 42.03 | 0.303 | 11.1 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 5 | 23.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 48 | 24.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 50 | 24.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 53 | 24.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 54 | 24.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 56 | 24.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 69 | 24.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 81 | 24.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 82 | 24.22 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 168 | 24.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 169 | 24.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 188 | 24.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 193 | 24.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 212 | 24.54 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 218 | 24.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 250 | 24.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 253 | 24.59 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 266 | 24.61 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 332 | 24.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 353 | 24.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 391 | 24.75 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 421 | 24.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 505 | 24.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 576 | 24.93 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 586 | 24.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 605 | 24.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 606 | 24.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 612 | 24.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 626 | 24.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 703 | 25.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 754 | 25.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 773 | 25.08 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 811 | 25.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 812 | 25.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 890 | 25.16 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 905 | 25.17 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 929 | 25.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |