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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0574200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UspA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.27 (0.0341) R2 : 0.485
β1 : 1.12 (0.128) R2dD : 0.0948 R2D : 0.00592
β2 : 1.66 (0.0916) R2dC : 0.458 R2C : 0.255
β3 : -1.03 (0.132) R2dE : 0.0891 R2E : -0.154
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.696 (0.0733) R2dN8 : 0.14 R2N8 : 0.0487
σ : 0.635
deviance : 186.04
__
_____
C
peak time of C : 21.9
E
wheather : temperature
threshold : 24.9
memory length : 858
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.87 0.637 9.22 1.53 1.74 -1.31 0.258 2.3 0.813 21.7 24.72 765 -- --
185.63 0.635 9.25 1.24 1.74 -1.15 0.614 -- 0.726 21.6 24.85 790 -- --
184.04 0.632 9.21 1.58 1.73 -1.32 -- 2.54 0.831 21.7 24.6 778 -- --
186.04 0.635 9.27 1.12 1.66 -1.03 -- -- 0.696 21.9 24.9 858 -- --
284.53 0.79 9.18 1.36 -- -1.3 -- 2.48 0.815 -- 24.3 1492 -- --
210.18 0.68 9.28 0.88 1.34 -- 0.202 -- 0.611 22.1 -- -- -- --
210.34 0.679 9.28 0.872 1.34 -- -- -- 0.61 22.1 -- -- -- --
279.5 0.782 9.2 1.11 -- -1.26 -- -- 0.793 -- 22.68 1511 -- --
216.82 0.686 9.29 -- 1.57 -0.733 -- -- 0.553 21.9 25.4 835 -- --
319.28 0.835 9.24 0.89 -- -- -- -- 0.612 -- -- -- -- --
230.38 0.71 9.3 -- 1.35 -- -- -- 0.513 22.2 -- -- -- --
311.17 0.824 9.23 -- -- -1.06 -- -- 0.644 -- 22.68 1511 -- --
340.19 0.861 9.26 -- -- -- -- -- 0.513 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.88 humidity 50 720 > th dose dependent rect. 14 9
5 177.27 humidity 50 720 > th dose dependent sin 16 NA
9 177.55 humidity 50 720 > th dose dependent rect. 12 15
18 177.97 humidity 90 720 < th dose dependent rect. 14 10
40 178.55 humidity 70 720 > th dose independent sin 14 NA
59 178.80 humidity 90 720 < th dose dependent sin 16 NA
65 178.90 humidity 80 720 < th dose dependent sin 14 NA
69 178.96 humidity 70 720 > th dose independent rect. 14 17
83 179.10 humidity 70 720 > th dose independent rect. 16 15
120 179.39 humidity 70 720 > th dose independent rect. 14 9
143 179.53 humidity 70 720 < th dose independent sin 14 NA
168 179.74 humidity 70 720 < th dose independent rect. 17 2
172 179.76 humidity 70 720 > th dose independent rect. 16 7
194 180.08 humidity 70 720 < th dose independent rect. 14 18
198 180.13 humidity 70 720 < th dose independent rect. 14 6
314 181.09 radiation 10 1440 > th dose independent rect. 10 3
364 181.30 radiation 10 1440 > th dose independent rect. 11 1
376 181.40 radiation 10 1440 > th dose independent rect. 9 5
522 182.65 radiation 10 720 < th dose dependent rect. 13 5
545 182.86 radiation 10 720 < th dose dependent rect. 14 9
546 182.87 radiation 1 720 < th dose independent sin 18 NA
553 182.93 radiation 1 720 < th dose independent rect. 10 15
564 182.99 radiation 1 720 > th dose independent rect. 8 11
576 182.99 temperature 25 30 < th dose independent rect. 5 23
594 183.11 radiation 10 720 < th dose dependent rect. 14 11
601 183.17 temperature 25 720 > th dose dependent rect. 10 18
619 183.28 radiation 1 720 > th dose independent sin 18 NA
624 183.31 temperature 25 10 < th dose independent rect. 12 16
633 183.35 temperature 25 720 > th dose dependent sin 18 NA
654 183.41 radiation 10 720 < th dose dependent sin 17 NA
657 183.43 temperature 25 30 < th dose independent rect. 10 18
705 183.59 humidity 70 720 > th dose dependent rect. 19 2
718 183.65 temperature 25 720 > th dose dependent rect. 13 22
733 183.71 radiation 10 1440 > th dose independent rect. 9 8
739 183.72 radiation 10 720 < th dose dependent rect. 11 7
742 183.73 wind 1 1440 < th dose independent rect. 5 1
767 183.80 radiation 1 1440 < th dose independent rect. 9 3
769 183.80 radiation 1 1440 < th dose dependent rect. 9 3
838 183.97 humidity 50 1440 > th dose dependent rect. 12 2
866 184.03 humidity 90 1440 < th dose dependent rect. 12 2
900 184.18 temperature 25 1440 > th dose dependent rect. 13 1
908 184.21 temperature 25 1440 > th dose dependent rect. 13 3
920 184.24 temperature 25 720 > th dose dependent no NA NA
932 184.27 temperature 25 720 > th dose dependent rect. 3 23
951 184.32 temperature 25 720 > th dose dependent rect. 17 23
964 184.37 temperature 25 1440 > th dose dependent rect. 15 1
974 184.40 humidity 80 1440 > th dose independent rect. 11 3
979 184.41 temperature 25 720 > th dose dependent rect. 21 23
986 184.44 temperature 25 30 > th dose independent rect. 8 20
988 184.44 radiation 20 1440 < th dose dependent rect. 11 3
989 184.44 temperature 25 720 > th dose dependent rect. 13 7