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Os06g0573600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.33 (0.0421) R2 : 0.382
β1 : -1.97 (0.151) R2dD : 0.244 R2D : 0.0351
β2 : 1.96 (0.203) R2dC : 0.469 R2C : -0.499
β3 : 2.59 (0.229) R2dE : 0.66 R2E : -0.541
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1 (0.0922) R2dN8 : 0.246 R2N8 : -0.0135
σ : 0.76
deviance : 266.38
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C
peak time of C : 18.3
E
wheather : temperature
threshold : 16.69
memory length : 349
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.5
open length of G : 9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.49 0.767 9.34 -1.99 2.04 2.5 0.759 -0.56 -1.01 18.3 15.94 293 23.8 8.93
266.32 0.76 9.33 -1.94 2.09 2.57 0.736 -- -0.972 18.3 15.96 303 23.7 9.02
266.82 0.761 9.35 -1.98 2.03 2.54 -- -0.689 -1.02 18.2 16.49 303 23.7 8.96
266.38 0.76 9.33 -1.97 1.96 2.59 -- -- -1 18.3 16.69 349 23.5 9
302.11 0.81 9.27 -1.98 -- 1.3 -- 0.807 -0.95 -- 12.97 1369 23.5 9.49
335.56 0.859 9.2 -1.64 0.236 -- -0.53 -- -0.651 11.6 -- -- -- --
336.59 0.859 9.2 -1.66 0.244 -- -- -- -0.652 12.6 -- -- -- --
303.2 0.811 9.27 -2.04 -- 1.32 -- -- -0.892 -- 11.75 1356 22.7 10.3
365.82 0.891 9.3 -- 1.87 2.38 -- -- -0.756 18 15.73 324 23.8 8.58
340.33 0.862 9.2 -1.67 -- -- -- -- -0.656 -- -- -- -- --
408.91 0.946 9.16 -- 0.27 -- -- -- -0.468 12.9 -- -- -- --
396.75 0.928 9.18 -- -- 0.724 -- -- -0.56 -- -3.833 2445 1.6 5.05
413.46 0.949 9.16 -- -- -- -- -- -0.472 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.95 temperature 15 270 > th dose dependent rect. 24 9
3 271.77 temperature 20 720 > th dose dependent rect. 21 12
5 271.94 temperature 20 720 > th dose dependent rect. 19 14
6 272.38 temperature 20 720 > th dose dependent rect. 17 16
7 272.40 temperature 10 720 > th dose dependent rect. 21 8
8 272.47 temperature 20 720 > th dose dependent rect. 21 8
9 272.51 temperature 10 720 > th dose dependent rect. 17 16
11 273.19 temperature 20 720 > th dose dependent rect. 21 10
14 273.37 temperature 20 720 > th dose dependent sin 10 NA
30 275.25 temperature 30 720 < th dose dependent sin 11 NA
32 275.31 temperature 30 720 < th dose dependent rect. 18 14
44 275.82 temperature 10 720 > th dose dependent sin 11 NA
54 276.00 temperature 30 720 < th dose dependent rect. 19 11
148 278.97 temperature 25 720 < th dose dependent rect. 22 5
319 282.27 temperature 20 270 > th dose independent rect. 24 9
420 283.32 radiation 30 1440 < th dose independent rect. 21 11
488 283.95 temperature 25 1440 > th dose dependent rect. 15 10
523 284.23 temperature 25 1440 > th dose dependent rect. 16 1
535 284.31 temperature 10 720 > th dose dependent rect. 6 23
548 284.41 temperature 25 720 < th dose dependent rect. 7 22
566 284.53 temperature 25 1440 > th dose dependent rect. 15 4
572 284.55 temperature 10 720 > th dose dependent rect. 8 23
582 284.61 temperature 10 720 > th dose dependent rect. 21 23
608 284.75 temperature 20 270 > th dose independent rect. 2 16
639 284.94 temperature 15 720 > th dose dependent no NA NA
670 285.06 radiation 30 1440 < th dose independent rect. 19 13
680 285.11 temperature 30 720 < th dose dependent no NA NA
688 285.13 temperature 15 720 > th dose dependent rect. 8 21
736 285.39 radiation 30 1440 > th dose independent rect. 7 1
773 285.54 temperature 10 1440 > th dose dependent rect. 15 8
782 285.57 temperature 25 720 < th dose dependent rect. 3 23
789 285.59 temperature 15 720 > th dose dependent rect. 19 23
852 285.86 temperature 10 720 > th dose dependent rect. 2 23
875 285.95 temperature 10 1440 > th dose dependent rect. 16 3
910 286.08 temperature 15 720 > th dose dependent rect. 4 23
911 286.08 temperature 30 720 < th dose dependent rect. 24 23
947 286.24 radiation 30 1440 < th dose independent rect. 6 2