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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0569900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ent-kaurene oxidase 1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0209) R2 : 0.96
β1 : -0.802 (0.0764) R2dD : 0.0101 R2D : -0.219
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 4.44 (0.0445) R2dN8 : 1.18 R2N8 : 0.949
σ : 0.391
deviance : 70.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.3 0.383 3.21 -0.899 0.0941 0.272 -0.312 -1.72 4.43 7.31 67.52 683 -- --
69.33 0.388 3.19 -0.838 0.0797 0.191 0.276 -- 4.45 7.33 65.93 721 -- --
66.4 0.38 3.2 -0.885 0.0885 0.277 -- -1.5 4.45 7.95 66.1 710 -- --
69.02 0.389 3.2 -0.808 0.0645 -0.155 -- -- 4.42 13.5 66.1 710 -- --
66.63 0.38 3.21 -0.894 -- 0.213 -- -1.34 4.45 -- 65 949 -- --
70.03 0.392 3.2 -0.81 0.00232 -- -0.213 -- 4.44 21.4 -- -- -- --
70.19 0.392 3.2 -0.802 0.00976 -- -- -- 4.44 2.51 -- -- -- --
69.22 0.389 3.2 -0.809 -- -0.125 -- -- 4.42 -- 66.1 710 -- --
86.2 0.435 3.18 -- 0.072 -0.14 -- -- 4.51 13.9 66.1 710 -- --
70.19 0.391 3.2 -0.802 -- -- -- -- 4.44 -- -- -- -- --
87.15 0.437 3.18 -- 0.00657 -- -- -- 4.53 16.4 -- -- -- --
84.96 0.429 3.19 -- -- -0.31 -- -- 4.48 -- 50.06 4318 -- --
87.15 0.436 3.18 -- -- -- -- -- 4.53 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.87 humidity 80.0 720 < th dose independent rect. 19 1
2 61.32 humidity 80.0 720 < th dose dependent rect. 19 1
3 61.44 humidity 80.0 720 < th dose dependent rect. 18 3
17 62.06 temperature 25.0 270 < th dose independent rect. 18 12
20 62.54 radiation 40.0 720 < th dose independent rect. 15 8
28 62.70 humidity 80.0 720 > th dose independent rect. 19 1
48 63.00 radiation 40.0 720 < th dose independent rect. 14 13
54 63.18 humidity 80.0 270 < th dose independent rect. 19 8
63 63.27 radiation 40.0 720 < th dose independent rect. 15 10
78 63.50 temperature 25.0 270 > th dose independent sin 12 NA
84 63.67 radiation 40.0 720 < th dose independent rect. 15 3
86 63.70 temperature 25.0 270 < th dose independent sin 12 NA
88 63.72 radiation 40.0 720 < th dose independent rect. 13 6
91 63.76 temperature 20.0 30 > th dose dependent rect. 22 5
98 63.81 humidity 60.0 720 > th dose independent rect. 15 12
106 63.93 temperature 20.0 720 > th dose independent rect. 12 3
118 63.99 temperature 25.0 270 > th dose independent rect. 17 13
133 64.13 humidity 80.0 14400 > th dose independent rect. 19 1
136 64.19 temperature 25.0 270 > th dose independent rect. 17 10
142 64.24 humidity 80.0 14400 < th dose independent rect. 19 1
150 64.26 humidity 60.0 720 > th dose independent rect. 15 3
159 64.32 temperature 10.0 720 > th dose dependent rect. 3 3
161 64.33 radiation 10.0 14400 < th dose dependent rect. 8 2
176 64.45 temperature 20.0 30 > th dose dependent rect. 17 10
188 64.54 humidity 80.0 270 > th dose independent rect. 16 11
192 64.55 humidity 70.0 43200 > th dose dependent rect. 5 2
195 64.57 radiation 1.0 720 > th dose dependent rect. 18 1
206 64.58 radiation 10.0 14400 > th dose independent rect. 8 2
217 64.61 humidity 60.0 720 > th dose independent rect. 15 19
220 64.61 radiation 10.0 14400 < th dose dependent rect. 8 8
221 64.62 humidity 50.0 720 > th dose dependent rect. 15 4
224 64.64 temperature 25.0 270 > th dose dependent rect. 22 9
233 64.69 precipitation 0.1 43200 > th dose independent rect. 10 4
235 64.72 precipitation 0.1 43200 > th dose independent rect. 7 10
236 64.72 precipitation 0.1 43200 < th dose independent rect. 7 10
239 64.72 precipitation 0.1 43200 < th dose dependent rect. 7 10
240 64.73 radiation 10.0 14400 > th dose independent rect. 7 5
243 64.74 precipitation 0.1 43200 > th dose independent sin 0 NA
244 64.74 precipitation 0.1 43200 < th dose independent sin 0 NA
245 64.74 wind 1.0 30 < th dose independent rect. 21 6
250 64.74 precipitation 0.1 43200 < th dose dependent sin 0 NA
261 64.77 precipitation 0.1 43200 < th dose independent rect. 5 14
267 64.77 precipitation 0.1 43200 < th dose dependent rect. 5 14
268 64.78 precipitation 0.1 43200 < th dose independent rect. 10 4
270 64.78 precipitation 0.1 43200 > th dose independent rect. 5 14
271 64.78 humidity 80.0 720 < th dose dependent sin 12 NA
273 64.78 precipitation 0.1 43200 < th dose dependent rect. 10 4
282 64.81 precipitation 0.1 43200 > th dose independent rect. 24 19
283 64.81 precipitation 0.1 43200 < th dose independent rect. 24 19
284 64.81 precipitation 0.1 43200 < th dose dependent rect. 24 19
285 64.82 temperature 20.0 720 > th dose independent rect. 12 1
286 64.82 radiation 10.0 14400 > th dose independent rect. 11 1
295 64.86 precipitation 0.1 4320 < th dose independent rect. 4 2
298 64.86 precipitation 0.1 4320 < th dose dependent rect. 4 2
309 64.89 radiation 40.0 720 < th dose independent rect. 15 17
313 64.89 precipitation 0.1 43200 < th dose independent rect. 21 21
317 64.89 precipitation 0.1 43200 < th dose dependent rect. 21 21
328 64.91 temperature 25.0 270 > th dose independent rect. 22 2
330 64.91 precipitation 0.1 720 < th dose independent rect. 3 12
332 64.91 precipitation 0.1 43200 > th dose independent rect. 4 17
333 64.91 precipitation 0.1 43200 < th dose independent rect. 4 17
334 64.91 precipitation 0.1 4320 > th dose dependent rect. 4 2
335 64.91 precipitation 0.1 720 < th dose dependent rect. 3 12
336 64.91 precipitation 0.1 43200 < th dose dependent rect. 4 17
345 64.93 precipitation 0.1 4320 > th dose independent rect. 4 2
358 64.95 temperature 25.0 270 > th dose dependent rect. 22 3
384 64.99 wind 3.0 30 < th dose dependent rect. 24 3
385 64.99 precipitation 0.1 43200 > th dose dependent rect. 9 5
386 64.99 wind 3.0 30 < th dose dependent rect. 17 10
394 65.01 wind 9.0 720 < th dose independent rect. 3 12
400 65.01 radiation 10.0 14400 > th dose independent rect. 17 19
412 65.02 wind 9.0 720 < th dose independent rect. 15 12
431 65.04 precipitation 0.1 43200 > th dose independent rect. 4 20
432 65.04 precipitation 0.1 43200 < th dose independent rect. 4 20
434 65.04 temperature 15.0 30 > th dose independent rect. 3 23
435 65.04 precipitation 0.1 43200 > th dose dependent rect. 7 10
436 65.04 wind 9.0 30 < th dose dependent rect. 17 11
437 65.04 precipitation 0.1 43200 < th dose dependent rect. 4 20
507 65.08 precipitation 0.1 4320 > th dose independent rect. 3 4
519 65.08 precipitation 0.1 43200 > th dose dependent sin 1 NA
521 65.08 precipitation 0.1 4320 > th dose dependent rect. 3 4
568 65.11 precipitation 0.1 43200 > th dose independent rect. 17 20
575 65.12 precipitation 0.1 43200 < th dose independent rect. 17 20
582 65.12 precipitation 0.1 43200 < th dose dependent rect. 17 20
595 65.13 precipitation 0.1 43200 > th dose dependent rect. 3 16
635 65.15 precipitation 0.1 43200 > th dose dependent rect. 23 20
659 65.17 temperature 10.0 720 > th dose independent rect. 3 12
660 65.17 temperature 10.0 720 > th dose independent rect. 15 12
671 65.17 precipitation 0.1 43200 > th dose dependent rect. 21 20
690 65.19 radiation 40.0 1440 > th dose independent rect. 14 2
728 65.20 wind 9.0 10 < th dose independent rect. 3 23
731 65.20 wind 1.0 10 < th dose dependent rect. 2 1
738 65.21 radiation 10.0 14400 > th dose independent sin 4 NA
792 65.24 precipitation 0.1 43200 > th dose independent rect. 12 23
803 65.25 temperature 25.0 720 < th dose independent rect. 7 2
807 65.25 atmosphere 995.0 720 > th dose independent rect. 3 12
808 65.25 precipitation 0.1 43200 > th dose independent rect. 16 16
857 65.27 precipitation 0.1 43200 > th dose independent no NA NA
858 65.27 precipitation 0.1 43200 < th dose independent no NA NA
869 65.27 precipitation 0.1 43200 < th dose dependent no NA NA
878 65.28 precipitation 0.1 43200 > th dose independent rect. 9 23
879 65.28 precipitation 0.1 43200 < th dose independent rect. 9 23
881 65.28 radiation 40.0 720 > th dose dependent rect. 14 1
903 65.28 precipitation 0.1 43200 < th dose dependent rect. 9 23
934 65.31 radiation 40.0 14400 > th dose independent rect. 14 2
962 65.31 humidity 50.0 10 > th dose dependent rect. 17 11
969 65.32 wind 1.0 10 < th dose independent rect. 2 1