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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0569700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.51 (0.0405) R2 : 0.415
β1 : -1.74 (0.153) R2dD : 0.19 R2D : 0.273
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.69 (0.197) R2dE : 0.108 R2E : 0.141
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.465 (0.0878) R2dN8 : 0.0514 R2N8 : 0.0544
σ : 0.754
deviance : 262.19
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 8.9
memory length : 1440
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.02
open length of G : 6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
249.68 0.742 3.46 -1.72 0.769 -2.05 -0.477 1.9 0.495 8.12 9 1442 4 6
248.57 0.734 3.47 -1.75 0.693 -2.05 0.0923 -- 0.521 7.91 8.9 1441 4 5.91
246.24 0.731 3.45 -1.73 0.78 -1.76 -- 2.01 0.524 8.05 8.841 1442 4.01 5.97
247.28 0.732 3.48 -1.74 0.79 -2.13 -- -- 0.498 8.08 8.899 1441 4 5.99
259.36 0.75 3.47 -1.67 -- -1.19 -- 2.11 0.545 -- 8.099 1443 3.95 5.92
299.45 0.811 3.53 -2.08 0.322 -- -0.36 -- 0.333 13.3 -- -- -- --
299.97 0.811 3.53 -2.09 0.322 -- -- -- 0.331 13.1 -- -- -- --
262.19 0.754 3.51 -1.74 -- -1.69 -- -- 0.465 -- 8.9 1440 4.02 6
322.07 0.836 3.42 -- 1.01 -2.78 -- -- 0.725 7.78 8.82 1441 4.01 6
306.41 0.818 3.54 -2.1 -- -- -- -- 0.325 -- -- -- -- --
414.89 0.953 3.48 -- 0.358 -- -- -- 0.564 13.3 -- -- -- --
337.57 0.856 3.45 -- -- -2.31 -- -- 0.705 -- 8.843 1440 3.9 6.04
422.78 0.96 3.48 -- -- -- -- -- 0.558 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.66 wind 9.0 1440 < th dose independent rect. 4 6
5 258.80 wind 9.0 1440 < th dose independent rect. 7 3
6 260.60 atmosphere 995.0 90 > th dose dependent rect. 9 18
12 263.62 wind 1.0 14400 > th dose independent rect. 15 8
16 264.19 wind 1.0 14400 > th dose independent rect. 12 11
18 264.26 atmosphere 1015.0 90 < th dose independent rect. 13 20
19 264.55 wind 1.0 14400 < th dose independent rect. 12 11
21 264.70 wind 1.0 14400 < th dose independent rect. 10 13
26 264.94 wind 1.0 14400 > th dose independent rect. 10 13
29 265.08 wind 1.0 14400 > th dose independent rect. 7 17
31 265.11 atmosphere 995.0 270 > th dose dependent rect. 7 18
38 265.30 atmosphere 995.0 270 > th dose dependent rect. 9 1
49 265.56 atmosphere 995.0 90 > th dose dependent rect. 9 4
55 265.82 wind 1.0 14400 > th dose independent sin 19 NA
56 265.83 radiation 40.0 4320 > th dose dependent rect. 9 2
58 265.90 humidity 70.0 4320 < th dose independent rect. 19 1
59 266.05 wind 9.0 1440 < th dose independent rect. 9 1
60 266.07 radiation 40.0 4320 > th dose independent rect. 7 4
79 266.16 humidity 70.0 4320 > th dose independent rect. 19 1
80 266.19 atmosphere 1015.0 270 < th dose independent rect. 13 18
83 266.27 wind 1.0 14400 < th dose independent rect. 7 17
100 266.31 atmosphere 1015.0 270 < th dose independent rect. 11 21
101 266.32 wind 9.0 1440 > th dose independent rect. 9 1
115 266.46 atmosphere 1010.0 270 < th dose independent rect. 11 10
116 266.48 wind 1.0 14400 < th dose independent sin 19 NA
123 266.67 wind 7.0 1440 > th dose dependent rect. 9 1
126 266.69 atmosphere 995.0 270 > th dose dependent rect. 7 6
129 266.71 atmosphere 995.0 90 > th dose dependent rect. 9 6
137 266.86 temperature 10.0 90 > th dose dependent rect. 3 6
141 266.93 wind 1.0 14400 < th dose dependent rect. 9 15
171 267.20 wind 1.0 14400 < th dose dependent rect. 12 12
173 267.27 precipitation 0.1 43200 < th dose independent rect. 8 1
174 267.27 precipitation 0.1 43200 < th dose dependent rect. 8 1
177 267.33 temperature 30.0 90 < th dose independent rect. 9 4
181 267.36 wind 1.0 14400 < th dose independent rect. 10 10
182 267.37 temperature 30.0 270 < th dose independent rect. 9 1
186 267.42 atmosphere 995.0 10 > th dose dependent rect. 9 6
199 267.60 radiation 40.0 4320 > th dose independent sin 10 NA
216 267.86 precipitation 0.1 43200 > th dose independent rect. 8 1
217 267.86 precipitation 0.1 43200 > th dose dependent rect. 8 1
221 267.89 wind 1.0 14400 < th dose independent rect. 10 8
222 267.89 wind 1.0 14400 > th dose independent rect. 10 10
231 268.02 wind 1.0 14400 > th dose independent rect. 10 8
244 268.14 humidity 60.0 270 > th dose independent rect. 9 1
254 268.30 temperature 10.0 90 > th dose dependent rect. 13 20
260 268.35 wind 7.0 43200 > th dose dependent rect. 4 8
265 268.44 temperature 30.0 270 < th dose independent rect. 20 15
269 268.46 precipitation 0.1 43200 > th dose dependent rect. 6 3
276 268.50 humidity 60.0 4320 < th dose dependent rect. 17 1
277 268.52 temperature 10.0 270 > th dose dependent rect. 24 8
278 268.53 precipitation 0.1 43200 > th dose independent rect. 6 3
290 268.67 atmosphere 1015.0 90 < th dose independent rect. 15 18
320 268.79 wind 7.0 43200 > th dose dependent rect. 23 13
322 268.80 temperature 30.0 270 < th dose independent rect. 7 6
333 268.90 wind 7.0 43200 > th dose dependent rect. 7 5
337 268.92 wind 1.0 43200 < th dose dependent rect. 16 4
346 268.96 radiation 40.0 4320 > th dose dependent sin 10 NA
355 269.03 wind 1.0 14400 < th dose dependent rect. 7 17
394 269.39 wind 3.0 14400 < th dose dependent rect. 15 1
436 269.47 wind 1.0 90 > th dose independent rect. 9 4
449 269.56 temperature 30.0 90 < th dose independent rect. 9 18
469 269.70 wind 1.0 14400 < th dose dependent rect. 15 9
492 269.91 wind 1.0 14400 < th dose independent rect. 10 4
538 270.12 temperature 15.0 270 > th dose independent rect. 11 9
540 270.13 radiation 1.0 90 > th dose independent rect. 9 4
542 270.13 wind 9.0 43200 < th dose independent rect. 22 14
543 270.14 wind 9.0 43200 < th dose independent rect. 4 8
545 270.17 wind 1.0 14400 < th dose dependent sin 19 NA
551 270.21 atmosphere 1005.0 90 > th dose independent rect. 9 4
562 270.29 atmosphere 1000.0 90 > th dose independent rect. 9 18
600 270.32 precipitation 0.1 90 < th dose independent rect. 13 20
601 270.32 precipitation 0.1 90 < th dose dependent rect. 13 20
607 270.38 temperature 30.0 90 < th dose independent rect. 9 6
608 270.38 atmosphere 995.0 90 > th dose dependent rect. 21 16
620 270.42 precipitation 0.1 90 < th dose independent rect. 3 6
622 270.42 precipitation 0.1 90 < th dose dependent rect. 3 6
630 270.49 wind 9.0 43200 > th dose independent rect. 21 15
634 270.51 wind 1.0 270 > th dose dependent rect. 9 1
641 270.55 temperature 10.0 90 > th dose independent rect. 9 4
642 270.55 atmosphere 995.0 90 > th dose independent rect. 9 4
643 270.55 atmosphere 1015.0 90 < th dose independent rect. 9 4
644 270.55 wind 5.0 90 < th dose independent rect. 3 6
647 270.55 temperature 10.0 90 > th dose independent rect. 13 20
650 270.56 wind 9.0 43200 < th dose independent rect. 7 5
652 270.56 atmosphere 1000.0 270 > th dose independent rect. 7 17
657 270.58 wind 9.0 90 < th dose independent rect. 3 6
658 270.58 temperature 10.0 90 > th dose independent rect. 3 6
660 270.58 humidity 50.0 90 > th dose independent rect. 3 6
661 270.58 atmosphere 995.0 90 > th dose independent rect. 3 6
662 270.58 atmosphere 1015.0 90 < th dose independent rect. 3 6
663 270.58 temperature 10.0 90 > th dose independent rect. 9 18
664 270.58 temperature 10.0 10 > th dose dependent rect. 3 6
668 270.62 precipitation 0.1 90 < th dose independent rect. 9 4
669 270.62 precipitation 0.1 90 < th dose dependent rect. 9 4
682 270.69 wind 1.0 90 > th dose independent rect. 9 16
702 270.82 wind 9.0 90 < th dose independent rect. 9 18
708 270.85 wind 1.0 270 > th dose independent rect. 7 6
712 270.87 wind 3.0 14400 < th dose dependent rect. 17 1
723 270.91 wind 9.0 90 < th dose dependent rect. 3 6
736 270.99 wind 9.0 43200 > th dose independent rect. 4 8
739 271.00 atmosphere 995.0 90 > th dose dependent rect. 2 7
742 271.01 wind 1.0 10 > th dose independent rect. 9 4
745 271.02 wind 3.0 14400 < th dose independent rect. 15 2
767 271.10 precipitation 0.1 90 < th dose independent rect. 1 8
772 271.10 precipitation 0.1 90 < th dose dependent rect. 1 8
773 271.10 temperature 10.0 270 > th dose dependent rect. 11 21
775 271.12 humidity 50.0 90 > th dose independent rect. 9 4
776 271.13 wind 7.0 43200 < th dose independent rect. 5 4
777 271.13 precipitation 0.1 90 < th dose independent rect. 9 18
779 271.13 precipitation 0.1 90 < th dose dependent rect. 9 18
780 271.14 atmosphere 1000.0 270 > th dose independent rect. 9 1
784 271.15 wind 9.0 43200 > th dose independent rect. 1 11
785 271.15 precipitation 0.1 270 < th dose independent rect. 10 23
787 271.15 precipitation 0.1 270 < th dose dependent rect. 10 23
794 271.18 humidity 50.0 270 > th dose independent rect. 7 17
816 271.28 wind 1.0 90 > th dose dependent rect. 9 4
822 271.30 wind 1.0 14400 < th dose dependent rect. 10 10
823 271.31 temperature 30.0 90 < th dose independent rect. 3 6
825 271.33 wind 9.0 90 < th dose independent rect. 1 8
827 271.33 temperature 10.0 270 > th dose dependent rect. 13 18
829 271.34 wind 7.0 43200 > th dose independent rect. 5 4
830 271.34 temperature 10.0 90 > th dose independent rect. 1 8
832 271.34 humidity 50.0 90 > th dose independent rect. 1 8
833 271.34 atmosphere 995.0 90 > th dose independent rect. 1 8
834 271.34 atmosphere 1015.0 90 < th dose independent rect. 1 8
835 271.34 temperature 10.0 90 > th dose independent rect. 9 16
857 271.44 wind 9.0 43200 > th dose independent rect. 10 3
858 271.44 humidity 50.0 90 > th dose independent rect. 9 18
861 271.45 wind 3.0 14400 > th dose independent rect. 15 1
868 271.46 wind 9.0 90 < th dose independent rect. 9 4
878 271.48 atmosphere 1000.0 270 > th dose independent rect. 7 6
888 271.53 radiation 40.0 270 < th dose independent rect. 24 8
939 271.69 precipitation 0.1 270 < th dose independent rect. 11 9
940 271.69 precipitation 0.1 270 < th dose independent rect. 13 18
941 271.69 atmosphere 995.0 90 > th dose independent rect. 13 20
943 271.69 precipitation 0.1 270 < th dose dependent rect. 11 9
944 271.69 atmosphere 995.0 270 > th dose dependent rect. 19 18
945 271.69 precipitation 0.1 270 < th dose dependent rect. 13 18
951 271.71 wind 9.0 43200 > th dose independent rect. 7 5
980 271.79 precipitation 0.1 90 < th dose independent rect. 9 16
981 271.79 wind 9.0 90 < th dose independent rect. 13 20
982 271.79 wind 1.0 10 > th dose dependent rect. 9 4
984 271.79 precipitation 0.1 90 < th dose dependent rect. 9 16