Os06g0569300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0569300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312.59 | 0.831 | 4.35 | 2.63 | 0.816 | 0.386 | -0.286 | -2.48 | 1.06 | 2.19 | 19.8 | 1517 | -- | -- |
| 321.51 | 0.835 | 4.41 | 2.45 | 0.764 | 1.1 | -0.00999 | -- | 1.02 | 2.02 | 18.8 | 1792 | -- | -- |
| 312.86 | 0.824 | 4.35 | 2.64 | 0.815 | 0.393 | -- | -2.46 | 1.06 | 2.27 | 19.75 | 1532 | -- | -- |
| 321.05 | 0.835 | 4.41 | 2.33 | 0.808 | 1.07 | -- | -- | 0.986 | 2.15 | 18.8 | 1769 | -- | -- |
| 350.05 | 0.871 | 4.36 | 2.64 | -- | 0.533 | -- | -2.82 | 1.02 | -- | 18.7 | 1665 | -- | -- |
| 334.02 | 0.857 | 4.45 | 1.96 | 0.809 | -- | -0.246 | -- | 0.83 | 2.12 | -- | -- | -- | -- |
| 334.23 | 0.856 | 4.45 | 1.97 | 0.81 | -- | -- | -- | 0.832 | 2.2 | -- | -- | -- | -- |
| 360.19 | 0.884 | 4.41 | 2.37 | -- | 1.07 | -- | -- | 1 | -- | 18.7 | 1767 | -- | -- |
| 435.95 | 0.978 | 4.5 | -- | 0.86 | -0.108 | -- | -- | 0.604 | 2.23 | 18.8 | 1769 | -- | -- |
| 373.37 | 0.903 | 4.44 | 2 | -- | -- | -- | -- | 0.851 | -- | -- | -- | -- | -- |
| 436.23 | 0.977 | 4.5 | -- | 0.848 | -- | -- | -- | 0.612 | 2.25 | -- | -- | -- | -- |
| 429.85 | 0.966 | 4.55 | -- | -- | -0.946 | -- | -- | 0.434 | -- | 12.06 | 17782 | -- | -- |
| 479.01 | 1.02 | 4.49 | -- | -- | -- | -- | -- | 0.629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.37 | humidity | 90 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 8 | 307.94 | humidity | 90 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 11 | 308.21 | humidity | 90 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 12 | 308.23 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 7 |
| 24 | 308.73 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 37 | 309.37 | humidity | 80 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 56 | 309.81 | humidity | 80 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 68 | 310.14 | humidity | 80 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 71 | 310.21 | humidity | 80 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 91 | 310.72 | humidity | 90 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 97 | 310.79 | humidity | 80 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 109 | 310.91 | humidity | 90 | 4320 | < th | dose independent | sin | 20 | NA |
| 118 | 311.13 | humidity | 80 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 131 | 311.24 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 153 | 311.55 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 157 | 311.62 | temperature | 15 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 170 | 311.77 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 15 |
| 171 | 311.79 | humidity | 90 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 199 | 312.00 | humidity | 80 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 209 | 312.03 | humidity | 80 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 228 | 312.20 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 238 | 312.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 240 | 312.30 | humidity | 90 | 4320 | > th | dose independent | rect. | 10 | 13 |
| 242 | 312.33 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 262 | 312.45 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 267 | 312.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 273 | 312.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 281 | 312.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 20 |
| 286 | 312.57 | humidity | 90 | 4320 | > th | dose independent | sin | 20 | NA |
| 287 | 312.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 293 | 312.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 297 | 312.63 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 303 | 312.66 | humidity | 80 | 4320 | > th | dose dependent | sin | 21 | NA |
| 315 | 312.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 320 | 312.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 321 | 312.73 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 23 |
| 331 | 312.79 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 334 | 312.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 341 | 312.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 348 | 312.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 375 | 312.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 379 | 312.92 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 403 | 312.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 432 | 313.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 443 | 313.04 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 478 | 313.11 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 485 | 313.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 496 | 313.14 | humidity | 70 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 497 | 313.15 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 505 | 313.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 526 | 313.20 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 559 | 313.25 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 575 | 313.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 594 | 313.32 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 668 | 313.47 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 3 |
| 759 | 313.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 890 | 313.87 | temperature | 20 | 1440 | < th | dose independent | sin | 4 | NA |
| 938 | 313.96 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |