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Os06g0568200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Vacuolar ATPase B subunit.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0111) R2 : 0.0279
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0846 (0.0234) R2dN8 : 0.036 R2N8 : 0.0279
σ : 0.209
deviance : 20.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.63 0.186 12.7 0.0318 0.211 -0.288 -0.14 -0.14 0.0348 6.66 38.71 1271 -- --
15.65 0.184 12.7 0.0245 0.216 -0.292 -0.153 -- 0.0342 6.72 38.71 1248 -- --
15.66 0.184 12.7 0.0273 0.216 -0.285 -- -0.156 0.0357 6.49 38.7 1239 -- --
15.7 0.185 12.7 0.0212 0.22 -0.292 -- -- 0.034 6.49 38.72 1239 -- --
17.98 0.197 12.7 0.029 -- -0.272 -- -0.174 0.0345 -- 38.71 1287 -- --
17.78 0.198 12.7 0.0362 0.209 -- 0.0318 -- 0.0844 5.49 -- -- -- --
17.78 0.197 12.7 0.0364 0.209 -- -- -- 0.0843 5.55 -- -- -- --
18 0.198 12.7 0.0238 -- -0.278 -- -- 0.0341 -- 38.7 1305 -- --
15.7 0.185 12.7 -- 0.221 -0.29 -- -- 0.0322 6.49 38.7 1239 -- --
20.05 0.209 12.7 0.0432 -- -- -- -- 0.0894 -- -- -- -- --
17.81 0.197 12.7 -- 0.21 -- -- -- 0.0802 5.55 -- -- -- --
18.02 0.198 12.7 -- -- -0.279 -- -- 0.0337 -- 38.7 1305 -- --
20.1 0.209 12.7 -- -- -- -- -- 0.0846 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.62 radiation 10.0 4320 < th dose dependent rect. 7 1
2 14.74 radiation 10.0 4320 < th dose dependent rect. 7 3
4 14.95 wind 9.0 43200 > th dose dependent rect. 11 2
5 14.97 wind 9.0 43200 > th dose independent rect. 11 2
9 15.03 radiation 40.0 43200 < th dose independent rect. 16 15
10 15.06 radiation 10.0 4320 < th dose independent rect. 9 1
14 15.09 wind 9.0 43200 < th dose independent rect. 11 2
19 15.12 radiation 10.0 1440 < th dose independent rect. 17 17
21 15.13 radiation 1.0 4320 > th dose dependent rect. 7 1
22 15.14 radiation 40.0 4320 < th dose dependent rect. 7 1
24 15.15 temperature 25.0 90 < th dose independent rect. 3 14
25 15.16 wind 1.0 43200 > th dose independent rect. 5 2
42 15.19 radiation 10.0 1440 < th dose independent rect. 5 5
55 15.20 wind 1.0 43200 < th dose independent rect. 5 2
56 15.20 radiation 40.0 43200 < th dose independent rect. 16 7
57 15.20 wind 1.0 43200 < th dose dependent rect. 5 2
58 15.21 radiation 10.0 4320 < th dose independent rect. 7 3
64 15.22 wind 1.0 43200 < th dose dependent rect. 4 7
65 15.23 wind 1.0 43200 < th dose independent rect. 4 6
85 15.27 wind 1.0 43200 > th dose independent rect. 4 6
86 15.27 temperature 25.0 90 < th dose independent rect. 3 16
88 15.28 temperature 25.0 90 < th dose independent rect. 3 10
90 15.29 radiation 30.0 14400 > th dose independent rect. 16 16
100 15.31 radiation 10.0 1440 < th dose independent sin 11 NA
114 15.32 radiation 10.0 43200 < th dose dependent rect. 8 1
144 15.34 radiation 30.0 14400 > th dose independent rect. 7 1
181 15.35 precipitation 0.1 43200 > th dose independent rect. 22 1
185 15.35 precipitation 0.1 43200 > th dose dependent rect. 22 1
205 15.36 wind 1.0 43200 > th dose dependent rect. 1 2
212 15.37 wind 9.0 43200 < th dose dependent rect. 1 2
217 15.37 radiation 10.0 43200 < th dose dependent rect. 8 6
219 15.37 wind 1.0 43200 > th dose dependent rect. 22 8
231 15.39 precipitation 0.1 43200 > th dose independent rect. 19 5
237 15.39 wind 9.0 43200 < th dose dependent rect. 22 8
239 15.40 precipitation 0.1 43200 < th dose independent rect. 22 1
242 15.40 precipitation 0.1 43200 < th dose independent rect. 19 5
255 15.40 precipitation 0.1 43200 < th dose dependent rect. 22 1
257 15.40 precipitation 0.1 43200 < th dose dependent rect. 19 5
258 15.40 radiation 40.0 4320 < th dose dependent rect. 24 8
263 15.41 radiation 10.0 4320 > th dose independent rect. 9 1
265 15.41 precipitation 0.1 43200 > th dose independent rect. 22 3
268 15.41 precipitation 0.1 43200 > th dose dependent rect. 22 3
286 15.42 temperature 25.0 270 < th dose independent rect. 1 13
331 15.44 precipitation 0.1 43200 > th dose dependent rect. 19 6
342 15.45 wind 1.0 14400 < th dose dependent rect. 19 8
354 15.46 precipitation 0.1 43200 > th dose independent rect. 15 2
356 15.46 precipitation 0.1 43200 < th dose independent rect. 21 3
357 15.46 radiation 10.0 43200 > th dose independent rect. 7 4
362 15.46 precipitation 0.1 43200 < th dose dependent rect. 21 3
370 15.47 precipitation 0.1 43200 < th dose independent rect. 15 2
375 15.47 precipitation 0.1 43200 > th dose dependent rect. 15 2
376 15.47 precipitation 0.1 43200 < th dose dependent rect. 15 2
393 15.48 radiation 10.0 1440 < th dose dependent sin 9 NA
396 15.48 wind 9.0 43200 < th dose dependent rect. 4 2
403 15.48 temperature 15.0 270 > th dose dependent rect. 5 9
405 15.48 humidity 90.0 14400 > th dose dependent rect. 20 9
406 15.49 radiation 40.0 14400 > th dose independent rect. 13 1
430 15.49 temperature 20.0 10 > th dose dependent rect. 6 10
446 15.50 temperature 25.0 270 < th dose independent rect. 1 8
463 15.51 radiation 40.0 14400 < th dose independent rect. 13 1
471 15.51 humidity 90.0 10 > th dose independent rect. 4 8
477 15.51 temperature 25.0 270 < th dose independent rect. 1 10
498 15.51 wind 1.0 43200 > th dose dependent rect. 4 2
513 15.51 temperature 30.0 10 < th dose dependent rect. 4 14
533 15.52 wind 1.0 14400 < th dose dependent rect. 21 6
557 15.53 radiation 30.0 14400 > th dose dependent rect. 7 1
575 15.53 humidity 90.0 90 > th dose dependent rect. 3 9
602 15.54 precipitation 0.1 43200 > th dose independent rect. 15 10
614 15.54 radiation 40.0 14400 > th dose independent rect. 13 20
649 15.55 precipitation 0.1 43200 < th dose independent rect. 15 9
657 15.55 precipitation 0.1 43200 > th dose independent rect. 9 15
658 15.55 precipitation 0.1 43200 < th dose independent rect. 9 15
675 15.55 precipitation 0.1 43200 < th dose dependent rect. 15 9
685 15.55 precipitation 0.1 43200 < th dose dependent rect. 9 15
692 15.56 temperature 25.0 90 < th dose independent rect. 3 6
700 15.56 precipitation 0.1 43200 > th dose independent rect. 12 12
701 15.56 precipitation 0.1 43200 < th dose independent rect. 12 12
727 15.56 precipitation 0.1 43200 < th dose dependent rect. 12 12
733 15.57 radiation 10.0 4320 > th dose independent rect. 7 3
824 15.58 radiation 10.0 43200 > th dose independent sin 5 NA
826 15.58 precipitation 0.1 43200 > th dose independent sin 16 NA
836 15.58 radiation 40.0 43200 < th dose independent rect. 16 10
843 15.58 precipitation 0.1 43200 > th dose independent rect. 15 13
845 15.58 precipitation 0.1 43200 > th dose independent rect. 12 16
846 15.58 precipitation 0.1 43200 < th dose independent rect. 12 16
890 15.58 precipitation 0.1 43200 < th dose dependent rect. 12 16
897 15.59 precipitation 0.1 43200 < th dose independent sin 16 NA
920 15.59 precipitation 0.1 43200 < th dose independent rect. 15 13
937 15.59 precipitation 0.1 43200 < th dose dependent sin 16 NA
962 15.59 precipitation 0.1 43200 < th dose dependent rect. 15 13
968 15.59 precipitation 0.1 43200 > th dose dependent rect. 9 16
973 15.60 temperature 25.0 90 < th dose independent sin 3 NA
978 15.60 radiation 20.0 43200 > th dose independent rect. 10 2
986 15.60 precipitation 0.1 43200 < th dose independent rect. 11 7
991 15.60 wind 1.0 43200 < th dose independent rect. 23 11