Os06g0568000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nonaspanin (TM9SF) family protein.
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Os06g0568000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nonaspanin (TM9SF) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.5 | 0.242 | 12.1 | 0.259 | 0.162 | -0.272 | 0.269 | -0.431 | 0.129 | 15.5 | 29.9 | 4331 | -- | -- |
| 26.59 | 0.24 | 12.1 | 0.221 | 0.16 | -0.299 | 0.224 | -- | 0.128 | 15.4 | 29.8 | 4302 | -- | -- |
| 26.7 | 0.241 | 12.1 | 0.257 | 0.162 | -0.274 | -- | -0.391 | 0.129 | 15.1 | 29.87 | 4330 | -- | -- |
| 26.73 | 0.241 | 12.1 | 0.202 | 0.163 | -0.309 | -- | -- | 0.125 | 15 | 29.8 | 4330 | -- | -- |
| 28.19 | 0.247 | 12.1 | 0.256 | -- | -0.261 | -- | -0.363 | 0.125 | -- | 29.9 | 4372 | -- | -- |
| 30.12 | 0.257 | 12.1 | 0.267 | 0.141 | -- | 0.237 | -- | 0.0825 | 15.8 | -- | -- | -- | -- |
| 30.27 | 0.258 | 12.1 | 0.271 | 0.142 | -- | -- | -- | 0.0838 | 15.3 | -- | -- | -- | -- |
| 28.18 | 0.247 | 12.1 | 0.184 | -- | -0.303 | -- | -- | 0.119 | -- | 29.8 | 4372 | -- | -- |
| 27.58 | 0.245 | 12.1 | -- | 0.16 | -0.357 | -- | -- | 0.11 | 15 | 29.86 | 4330 | -- | -- |
| 31.41 | 0.262 | 12.1 | 0.265 | -- | -- | -- | -- | 0.0801 | -- | -- | -- | -- | -- |
| 32.2 | 0.265 | 12.1 | -- | 0.137 | -- | -- | -- | 0.0537 | 15.3 | -- | -- | -- | -- |
| 29.03 | 0.251 | 12.1 | -- | -- | -0.338 | -- | -- | 0.105 | -- | 29.8 | 4372 | -- | -- |
| 33.26 | 0.269 | 12.1 | -- | -- | -- | -- | -- | 0.0507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 25.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 3 | 25.40 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 6 | 25.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 7 | 25.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 12 | 25.58 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 35 | 25.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 41 | 25.69 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 42 | 25.69 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 43 | 25.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 59 | 25.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 84 | 25.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 92 | 25.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 96 | 25.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 105 | 25.93 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 107 | 25.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 109 | 25.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 111 | 25.95 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 112 | 25.96 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 125 | 26.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 126 | 26.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 139 | 26.02 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 141 | 26.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 160 | 26.03 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 170 | 26.04 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 185 | 26.05 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 209 | 26.06 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 218 | 26.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 234 | 26.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 252 | 26.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 287 | 26.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 294 | 26.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 317 | 26.13 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 19 |
| 350 | 26.16 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 522 | 26.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 525 | 26.27 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 538 | 26.28 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 552 | 26.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 629 | 26.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 675 | 26.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 770 | 26.39 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 771 | 26.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 821 | 26.41 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 897 | 26.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 924 | 26.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 972 | 26.46 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |