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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0567800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0246) R2 : 0.00227
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0528 (0.0518) R2dN8 : 0.00294 R2N8 : 0.00227
σ : 0.463
deviance : 98.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.33 0.449 3.01 -0.29 0.302 0.325 -0.465 -0.988 -0.0282 9.17 89 665 -- --
93.41 0.45 3.02 -0.219 0.287 0.307 0.0166 -- -0.0145 9.04 88.71 679 -- --
91.86 0.446 3.01 -0.281 0.31 0.331 -- -0.724 -0.027 8.86 88.69 664 -- --
93.37 0.45 3.01 -0.209 0.307 0.325 -- -- -0.0183 8.79 88.6 665 -- --
94.64 0.453 3.01 -0.3 -- 0.283 -- -0.871 -0.0138 -- 88.41 1395 -- --
95.78 0.459 3.01 -0.245 0.129 -- -0.0483 -- 0.025 9.52 -- -- -- --
95.78 0.458 3.01 -0.247 0.131 -- -- -- 0.0248 9.29 -- -- -- --
95.69 0.456 3.02 -0.214 -- 0.246 -- -- -0.00218 -- 88.31 1307 -- --
94.51 0.453 3.01 -- 0.323 0.354 -- -- 0.000454 8.82 88.68 665 -- --
96.78 0.46 3.01 -0.247 -- -- -- -- 0.0253 -- -- -- -- --
97.39 0.462 3 -- 0.131 -- -- -- 0.0522 9.43 -- -- -- --
96.88 0.458 3.02 -- -- 0.286 -- -- 0.0164 -- 88.86 1309 -- --
98.39 0.463 3.01 -- -- -- -- -- 0.0528 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.37 humidity 90.0 720 < th dose independent rect. 1 5
3 89.59 humidity 90.0 720 < th dose dependent rect. 4 1
4 89.64 radiation 10.0 90 < th dose dependent rect. 10 2
5 89.93 temperature 20.0 30 > th dose dependent rect. 2 1
9 89.95 temperature 20.0 90 < th dose dependent rect. 12 4
10 89.96 atmosphere 1005.0 30 > th dose independent rect. 15 1
11 89.97 humidity 80.0 30 > th dose independent rect. 2 1
12 89.98 wind 3.0 30 < th dose dependent rect. 2 1
13 89.99 temperature 20.0 30 > th dose independent rect. 2 1
14 89.99 temperature 20.0 10 < th dose dependent rect. 12 5
15 90.01 wind 1.0 30 < th dose independent rect. 2 1
17 90.01 humidity 80.0 30 > th dose dependent rect. 2 1
20 90.04 humidity 90.0 720 < th dose independent rect. 24 16
21 90.05 humidity 90.0 720 < th dose dependent rect. 1 1
29 90.21 wind 9.0 30 < th dose independent rect. 3 23
30 90.22 radiation 1.0 90 < th dose independent rect. 14 1
32 90.22 atmosphere 1005.0 30 > th dose dependent rect. 2 1
33 90.22 radiation 1.0 90 < th dose dependent rect. 14 1
42 90.30 atmosphere 1005.0 30 > th dose dependent rect. 15 1
49 90.37 temperature 10.0 30 > th dose independent rect. 2 1
51 90.37 temperature 30.0 30 < th dose independent rect. 2 1
52 90.37 humidity 50.0 30 > th dose independent rect. 2 1
55 90.37 atmosphere 995.0 30 > th dose independent rect. 2 1
56 90.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
58 90.37 radiation 1.0 30 < th dose independent rect. 2 1
63 90.37 precipitation 0.1 30 < th dose independent rect. 2 1
64 90.37 temperature 10.0 30 > th dose independent rect. 3 23
65 90.37 radiation 1.0 30 < th dose dependent rect. 2 1
70 90.37 precipitation 0.1 30 < th dose dependent rect. 2 1
75 90.45 humidity 90.0 720 < th dose dependent rect. 1 5
76 90.46 humidity 90.0 720 < th dose independent sin 8 NA
77 90.47 radiation 10.0 90 < th dose independent rect. 10 2
81 90.49 atmosphere 1000.0 10 < th dose independent rect. 5 1
88 90.49 atmosphere 1000.0 10 < th dose dependent rect. 5 1
107 90.54 humidity 90.0 720 < th dose independent rect. 24 13
123 90.59 atmosphere 1015.0 30 < th dose dependent rect. 2 1
132 90.68 humidity 70.0 90 > th dose independent rect. 14 1
146 90.77 temperature 20.0 90 < th dose independent rect. 12 4
150 90.79 humidity 90.0 720 < th dose independent rect. 20 16
155 90.80 humidity 90.0 720 < th dose dependent rect. 23 10
166 90.87 temperature 20.0 90 < th dose dependent rect. 14 2
175 90.91 temperature 20.0 10 < th dose independent rect. 15 1
208 90.95 humidity 90.0 720 < th dose dependent rect. 21 13
229 91.01 radiation 20.0 90 < th dose independent rect. 10 6
232 91.01 temperature 30.0 30 < th dose dependent rect. 2 1
241 91.05 humidity 90.0 720 < th dose dependent rect. 3 3
245 91.06 humidity 50.0 720 > th dose dependent rect. 19 15
279 91.18 precipitation 0.1 1440 > th dose independent rect. 10 3
280 91.18 precipitation 0.1 1440 > th dose dependent rect. 10 3
285 91.20 wind 1.0 1440 < th dose independent rect. 17 1
288 91.20 wind 1.0 1440 < th dose dependent rect. 17 1
290 91.22 humidity 90.0 720 < th dose independent rect. 18 22
316 91.30 wind 9.0 10 > th dose independent rect. 15 1
326 91.30 wind 9.0 10 > th dose dependent rect. 15 1
349 91.36 humidity 90.0 720 < th dose dependent sin 9 NA
359 91.40 precipitation 0.1 1440 > th dose independent rect. 12 1
363 91.40 precipitation 0.1 1440 > th dose dependent rect. 12 1
366 91.41 humidity 70.0 720 > th dose dependent sin 9 NA
372 91.43 humidity 50.0 720 > th dose dependent sin 10 NA
377 91.44 humidity 80.0 720 > th dose dependent rect. 3 1
410 91.51 wind 1.0 30 > th dose independent rect. 2 1
411 91.51 wind 1.0 1440 > th dose independent rect. 17 1
414 91.51 humidity 90.0 720 < th dose independent rect. 14 22
435 91.55 humidity 50.0 720 > th dose dependent rect. 2 7
456 91.62 humidity 80.0 720 > th dose dependent rect. 21 17
461 91.65 humidity 50.0 720 > th dose dependent rect. 20 8
556 91.80 humidity 80.0 1440 > th dose independent rect. 24 2
578 91.84 humidity 90.0 720 < th dose independent rect. 7 23
580 91.85 atmosphere 1010.0 720 < th dose independent rect. 1 1
600 91.87 humidity 90.0 720 < th dose independent no NA NA
741 92.03 radiation 30.0 90 < th dose dependent rect. 10 6
818 92.13 humidity 90.0 720 < th dose independent rect. 3 23
827 92.14 humidity 80.0 270 > th dose independent sin 7 NA
850 92.17 humidity 90.0 720 < th dose independent rect. 5 23
885 92.20 humidity 80.0 720 > th dose dependent rect. 1 23
895 92.22 humidity 90.0 720 > th dose independent rect. 3 1
896 92.22 humidity 90.0 4320 > th dose independent rect. 3 2
909 92.23 humidity 80.0 720 > th dose dependent rect. 5 23
915 92.24 humidity 80.0 720 > th dose dependent no NA NA
945 92.28 temperature 30.0 10 > th dose dependent rect. 11 2
951 92.29 atmosphere 1010.0 90 < th dose independent rect. 24 12
963 92.30 humidity 80.0 720 > th dose dependent rect. 1 13
968 92.31 radiation 20.0 90 < th dose independent rect. 10 20