Os06g0567200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os06g0567200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 363.31 | 0.896 | 9.47 | -0.58 | 1.31 | -3.83 | 1.51 | -0.552 | -0.512 | 11 | 14.97 | 285 | 1.87 | 7.05 |
| 361.33 | 0.885 | 9.47 | -0.513 | 1.07 | -3.74 | 1.49 | -- | -0.484 | 11.6 | 16.55 | 299 | 1.8 | 6.87 |
| 367.73 | 0.893 | 9.47 | -0.51 | 1.38 | -4.12 | -- | 0.661 | -0.503 | 10.4 | 13.7 | 322 | 1.55 | 7.05 |
| 365.61 | 0.891 | 9.41 | -0.401 | 1.19 | -4.23 | -- | -- | -0.397 | 11.1 | 15.57 | 362 | 1.32 | 6.93 |
| 404.14 | 0.936 | 9.49 | -0.397 | -- | -3.17 | -- | 0.421 | -0.475 | -- | 17.43 | 224 | 1.78 | 6.85 |
| 523.88 | 1.07 | 9.64 | -0.775 | 2.15 | -- | 0.0188 | -- | -0.926 | 17.8 | -- | -- | -- | -- |
| 523.88 | 1.07 | 9.64 | -0.775 | 2.15 | -- | -- | -- | -0.926 | 17.8 | -- | -- | -- | -- |
| 401.71 | 0.933 | 9.5 | -0.488 | -- | -3.27 | -- | -- | -0.528 | -- | 17.85 | 274 | 1.28 | 6.82 |
| 365.14 | 0.89 | 9.44 | -- | 1.66 | -4.62 | -- | -- | -0.426 | 10.5 | 13.68 | 431 | 1.42 | 6.04 |
| 764.41 | 1.29 | 9.6 | -0.841 | -- | -- | -- | -- | -0.976 | -- | -- | -- | -- | -- |
| 539.72 | 1.09 | 9.62 | -- | 2.17 | -- | -- | -- | -0.84 | 17.8 | -- | -- | -- | -- |
| 403.55 | 0.936 | 9.48 | -- | -- | -3.36 | -- | -- | -0.443 | -- | 17.59 | 429 | 1.33 | 4.83 |
| 783.08 | 1.31 | 9.58 | -- | -- | -- | -- | -- | -0.883 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 365.89 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 2 | 371.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 8 | 377.84 | humidity | 80.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 16 | 381.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 20 | 382.51 | humidity | 80.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 29 | 386.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 55 | 392.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 63 | 393.70 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 64 | 393.92 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 70 | 394.94 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 71 | 395.29 | radiation | 10.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 115 | 400.03 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 119 | 400.38 | radiation | 20.0 | 90 | < th | dose independent | rect. | 6 | 15 |
| 121 | 400.96 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 129 | 401.60 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 132 | 401.97 | radiation | 20.0 | 30 | < th | dose dependent | sin | 19 | NA |
| 136 | 402.26 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 148 | 403.61 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 8 |
| 150 | 403.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 16 |
| 151 | 403.93 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 164 | 404.59 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 172 | 405.34 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 7 |
| 177 | 405.66 | humidity | 80.0 | 270 | < th | dose independent | sin | 4 | NA |
| 202 | 406.66 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 8 |
| 212 | 407.12 | humidity | 80.0 | 270 | > th | dose independent | sin | 3 | NA |
| 218 | 407.31 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 228 | 407.83 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 277 | 409.56 | radiation | 10.0 | 90 | > th | dose independent | sin | 21 | NA |
| 281 | 409.72 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 312 | 410.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 15 |
| 313 | 410.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 318 | 410.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 319 | 410.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 320 | 410.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 321 | 410.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 322 | 410.79 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 327 | 410.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 328 | 410.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 330 | 410.79 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 349 | 411.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 362 | 411.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 367 | 412.02 | humidity | 70.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 412 | 413.20 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 417 | 413.49 | radiation | 30.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 424 | 413.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 7 |
| 425 | 413.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 426 | 413.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 9 |
| 428 | 413.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 431 | 413.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 17 |
| 433 | 413.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 458 | 414.72 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 465 | 414.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 488 | 415.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 489 | 415.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 503 | 415.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 518 | 416.06 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 540 | 416.31 | radiation | 40.0 | 90 | < th | dose independent | rect. | 17 | 18 |
| 542 | 416.36 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 576 | 417.02 | radiation | 1.0 | 90 | > th | dose dependent | sin | 19 | NA |
| 613 | 417.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 648 | 418.68 | wind | 9.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 667 | 418.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 682 | 419.24 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 9 |
| 765 | 420.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 777 | 421.09 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 793 | 421.37 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 828 | 421.95 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 843 | 422.14 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 844 | 422.14 | radiation | 1.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 856 | 422.26 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 13 |
| 889 | 422.53 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 947 | 423.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 958 | 423.54 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 12 |