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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0565300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SMAD/FHA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.27 (0.0289) R2 : 0.695
β1 : 1.01 (0.11) R2dD : 0.0631 R2D : -0.0196
β2 : 0.768 (0.0716) R2dC : 0.0757 R2C : -0.0146
β3 : 1.08 (0.091) R2dE : 0.121 R2E : 0.251
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.23 (0.0676) R2dN8 : 0.377 R2N8 : 0.381
σ : 0.524
deviance : 126.38
__
_____
C
peak time of C : 19.8
E
wheather : temperature
threshold : 22.1
memory length : 2460
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.59 0.522 5.23 1.18 0.792 1.26 0.216 1.2 1.29 19.9 21.41 2709 -- --
127.5 0.526 5.26 1.03 0.716 1.18 0.162 -- 1.23 19.7 21.3 2520 -- --
123.71 0.518 5.23 1.17 0.788 1.26 -- 1.18 1.29 19.9 21.4 2677 -- --
126.38 0.524 5.27 1.01 0.768 1.08 -- -- 1.23 19.8 22.1 2460 -- --
153.49 0.577 5.22 1.19 -- 1.3 -- 1.17 1.28 -- 21.5 2224 -- --
162.74 0.598 5.2 1.46 0.796 -- 0.258 -- 1.58 20.3 -- -- -- --
162.94 0.598 5.2 1.46 0.796 -- -- -- 1.58 20.3 -- -- -- --
156.08 0.582 5.26 0.95 -- 1.13 -- -- 1.2 -- 22 2263 -- --
140.43 0.552 5.3 -- 0.787 1.74 -- -- 1.1 20.1 19.4 6945 -- --
198.02 0.658 5.18 1.45 -- -- -- -- 1.57 -- -- -- -- --
218.82 0.692 5.23 -- 0.789 -- -- -- 1.42 20.4 -- -- -- --
172.45 0.612 5.31 -- -- 1.52 -- -- 0.993 -- 21.55 3616 -- --
253.54 0.743 5.21 -- -- -- -- -- 1.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.82 temperature 15 10 > th dose dependent rect. 6 23
16 125.47 temperature 25 4320 < th dose dependent rect. 21 1
18 125.63 temperature 10 270 > th dose dependent rect. 3 23
20 126.11 temperature 20 10 > th dose dependent rect. 3 23
22 126.24 temperature 20 4320 < th dose independent rect. 13 11
35 126.64 temperature 20 4320 > th dose independent rect. 13 11
48 126.80 temperature 25 4320 < th dose dependent rect. 17 9
53 126.87 temperature 15 10 > th dose dependent no NA NA
58 126.91 temperature 20 10 > th dose dependent rect. 21 23
89 127.19 temperature 30 90 < th dose dependent rect. 23 23
99 127.28 temperature 10 4320 > th dose dependent rect. 23 2
100 127.28 temperature 10 4320 > th dose dependent rect. 21 5
115 127.38 temperature 20 10 > th dose dependent rect. 23 23
116 127.39 temperature 20 4320 < th dose independent sin 17 NA
148 127.54 temperature 20 90 > th dose dependent rect. 17 23
160 127.59 temperature 20 4320 > th dose independent sin 17 NA
167 127.62 temperature 25 4320 < th dose dependent sin 15 NA
183 127.65 temperature 25 1440 < th dose dependent rect. 16 20
194 127.71 temperature 20 10 > th dose dependent rect. 17 23
232 127.82 temperature 25 1440 < th dose dependent rect. 16 16
257 127.88 temperature 10 4320 > th dose dependent rect. 21 1
285 127.92 temperature 25 1440 < th dose dependent rect. 10 22
308 127.97 temperature 25 1440 < th dose dependent rect. 6 23
326 128.01 temperature 25 1440 < th dose dependent rect. 3 23
341 128.04 temperature 25 1440 < th dose dependent rect. 24 23
343 128.05 temperature 25 1440 < th dose dependent no NA NA
416 128.15 temperature 25 1440 < th dose dependent rect. 20 23
707 128.80 temperature 30 4320 < th dose dependent rect. 3 1
744 128.87 temperature 10 4320 > th dose dependent rect. 3 1
783 128.96 temperature 30 90 < th dose dependent rect. 11 23
857 129.14 temperature 30 30 < th dose dependent rect. 9 23
923 129.31 temperature 20 1440 > th dose independent rect. 3 20
974 129.41 temperature 20 10 > th dose dependent rect. 23 21
998 129.47 temperature 20 4320 > th dose independent rect. 21 2