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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0565200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.34 (0.0375) R2 : 0.186
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.918 (0.0906) R2dC : 0.183 R2C : 0.181
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.116 (0.079) R2dN8 : 0.005 R2N8 : 0.00272
σ : 0.708
deviance : 229.07
__
_____
C
peak time of C : 13.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.05 0.687 4.36 -0.293 0.638 -0.915 0.0981 1.14 0.0277 13.2 40 270 -- --
215.11 0.683 4.36 -0.281 0.635 -0.927 -0.185 -- 0.0275 13.1 39.84 255 -- --
214.08 0.681 4.36 -0.285 0.638 -0.916 -- 1.07 0.0276 13.2 39.99 269 -- --
215.21 0.683 4.36 -0.281 0.637 -0.926 -- -- 0.0306 13.2 39.83 253 -- --
233.57 0.712 4.36 -0.312 -- -1.29 -- 0.775 0.0631 -- 39.82 255 -- --
225.97 0.705 4.35 -0.308 0.912 -- -0.324 -- 0.0826 13.6 -- -- -- --
226.39 0.705 4.35 -0.319 0.913 -- -- -- 0.0808 13.6 -- -- -- --
232.68 0.71 4.37 -0.311 -- -1.59 -- -- -0.000276 -- 39.88 238 -- --
217.3 0.687 4.35 -- 0.623 -0.974 -- -- 0.0557 13.2 39.82 249 -- --
277.3 0.778 4.36 -0.356 -- -- -- -- 0.0608 -- -- -- -- --
229.07 0.708 4.34 -- 0.918 -- -- -- 0.116 13.6 -- -- -- --
234.38 0.713 4.37 -- -- -1.6 -- -- -0.00223 -- 39.81 232 -- --
280.64 0.782 4.35 -- -- -- -- -- 0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.93 radiation 1.0 4320 < th dose independent rect. 7 1
2 207.97 radiation 1.0 4320 > th dose independent rect. 7 1
3 208.05 radiation 1.0 4320 < th dose dependent rect. 7 1
4 208.06 radiation 40.0 270 < th dose independent rect. 11 22
9 209.17 radiation 40.0 270 < th dose independent rect. 3 16
11 209.27 radiation 40.0 270 < th dose dependent rect. 13 20
17 209.69 radiation 40.0 270 < th dose independent rect. 2 19
26 209.87 radiation 20.0 720 < th dose independent rect. 15 9
28 209.91 radiation 40.0 720 < th dose dependent rect. 15 9
33 210.26 radiation 40.0 270 < th dose independent rect. 2 8
45 210.78 radiation 20.0 720 > th dose dependent rect. 15 17
87 211.57 radiation 40.0 270 < th dose dependent rect. 3 16
104 211.88 radiation 40.0 270 < th dose dependent rect. 3 6
114 212.16 radiation 40.0 4320 < th dose independent rect. 5 3
120 212.25 radiation 30.0 4320 < th dose independent rect. 7 1
124 212.29 radiation 30.0 4320 < th dose independent rect. 18 14
126 212.31 humidity 50.0 270 > th dose dependent rect. 2 8
128 212.32 humidity 90.0 4320 > th dose independent rect. 18 1
133 212.33 wind 9.0 270 < th dose dependent rect. 10 16
140 212.37 radiation 40.0 90 < th dose dependent rect. 3 21
147 212.43 radiation 20.0 4320 > th dose dependent rect. 7 1
153 212.48 radiation 30.0 4320 < th dose independent rect. 24 8
154 212.48 radiation 30.0 4320 < th dose independent rect. 22 10
182 212.58 temperature 20.0 10 > th dose independent rect. 18 17
186 212.60 humidity 90.0 90 < th dose dependent rect. 24 17
189 212.64 humidity 90.0 14400 > th dose dependent rect. 22 1
201 212.70 humidity 90.0 270 < th dose dependent rect. 23 15
205 212.72 radiation 40.0 4320 > th dose dependent rect. 15 1
228 212.80 radiation 40.0 270 < th dose independent rect. 12 10
230 212.81 wind 3.0 14400 < th dose dependent rect. 1 1
238 212.87 temperature 10.0 270 > th dose dependent rect. 2 7
252 212.96 temperature 20.0 10 > th dose independent rect. 15 20
256 212.99 atmosphere 1010.0 10 < th dose independent rect. 4 6
263 213.04 radiation 1.0 270 > th dose dependent rect. 7 7
281 213.16 humidity 90.0 14400 > th dose independent rect. 21 1
284 213.17 temperature 20.0 90 > th dose independent rect. 17 17
298 213.20 humidity 60.0 270 > th dose independent rect. 3 16
315 213.29 humidity 90.0 90 < th dose dependent rect. 9 8
319 213.32 radiation 20.0 1440 < th dose independent rect. 15 1
323 213.35 temperature 15.0 270 > th dose independent rect. 4 15
346 213.49 radiation 40.0 10 < th dose independent rect. 4 20
347 213.49 humidity 90.0 4320 > th dose dependent rect. 7 1
351 213.51 humidity 60.0 10 > th dose independent rect. 4 16
355 213.52 humidity 80.0 14400 > th dose dependent rect. 4 2
358 213.53 temperature 20.0 270 > th dose independent rect. 14 19
389 213.59 radiation 40.0 1440 > th dose dependent rect. 11 1
396 213.62 temperature 20.0 270 > th dose independent rect. 2 7
416 213.70 wind 1.0 1440 > th dose dependent rect. 13 3
417 213.70 wind 9.0 1440 < th dose dependent rect. 13 3
419 213.71 radiation 40.0 90 < th dose independent rect. 17 18
426 213.75 wind 1.0 270 > th dose independent rect. 14 8
431 213.76 humidity 90.0 270 < th dose dependent rect. 9 5
435 213.77 wind 5.0 270 < th dose independent rect. 10 16
445 213.79 radiation 30.0 4320 > th dose independent rect. 7 1
473 213.83 humidity 90.0 14400 < th dose independent rect. 21 1
475 213.83 wind 9.0 270 < th dose independent rect. 9 17
481 213.85 humidity 60.0 10 > th dose independent rect. 4 20
485 213.85 radiation 40.0 270 > th dose dependent rect. 12 23
498 213.90 humidity 60.0 90 > th dose independent rect. 3 8
516 213.93 humidity 50.0 14400 > th dose dependent rect. 4 2
518 213.94 radiation 20.0 720 > th dose independent rect. 16 15
524 213.95 radiation 20.0 90 < th dose independent rect. 14 10
529 213.96 radiation 20.0 720 > th dose independent rect. 16 1
549 213.97 wind 9.0 270 < th dose independent rect. 2 7
550 213.97 temperature 10.0 270 > th dose independent rect. 2 7
552 213.97 temperature 30.0 270 < th dose independent rect. 2 7
554 213.97 atmosphere 995.0 270 > th dose independent rect. 2 7
555 213.97 atmosphere 1015.0 270 < th dose independent rect. 2 7
556 213.97 temperature 10.0 270 > th dose independent rect. 9 17
573 214.01 radiation 20.0 720 > th dose dependent rect. 16 15
587 214.04 humidity 50.0 270 > th dose dependent rect. 3 15
589 214.05 radiation 40.0 270 < th dose independent sin 1 NA
590 214.05 atmosphere 1015.0 270 < th dose independent rect. 14 8
592 214.06 radiation 40.0 270 < th dose independent no NA NA
599 214.07 atmosphere 995.0 43200 < th dose dependent rect. 24 10
602 214.08 atmosphere 995.0 43200 > th dose independent rect. 4 6
607 214.09 radiation 20.0 720 > th dose dependent rect. 16 1
624 214.10 humidity 60.0 10 > th dose independent rect. 4 18
630 214.11 atmosphere 995.0 43200 < th dose independent rect. 3 7
637 214.12 atmosphere 995.0 43200 < th dose independent rect. 4 5
638 214.12 atmosphere 995.0 43200 < th dose dependent rect. 2 7
642 214.13 wind 9.0 14400 < th dose independent rect. 6 4
644 214.13 radiation 40.0 90 < th dose independent rect. 17 16
671 214.16 atmosphere 995.0 43200 < th dose independent rect. 5 3
672 214.16 atmosphere 995.0 43200 > th dose independent rect. 5 4
681 214.18 radiation 30.0 270 > th dose dependent rect. 15 23
682 214.19 precipitation 0.1 270 < th dose independent rect. 22 16
693 214.19 precipitation 0.1 270 < th dose dependent rect. 22 16
702 214.20 radiation 30.0 270 > th dose dependent rect. 7 7
725 214.22 humidity 50.0 30 > th dose dependent rect. 15 20
752 214.24 radiation 1.0 90 > th dose dependent rect. 10 7
788 214.30 precipitation 0.1 270 < th dose independent rect. 2 7
794 214.30 precipitation 0.1 270 < th dose dependent rect. 2 7
803 214.33 precipitation 0.1 270 < th dose independent rect. 14 8
807 214.33 precipitation 0.1 270 < th dose dependent rect. 14 8
813 214.35 atmosphere 995.0 270 > th dose independent rect. 8 7
815 214.35 radiation 20.0 10 < th dose independent rect. 14 10
824 214.36 atmosphere 995.0 43200 < th dose dependent rect. 14 20
832 214.38 radiation 30.0 720 > th dose independent rect. 15 17
866 214.39 temperature 10.0 270 > th dose independent rect. 14 8
867 214.39 temperature 10.0 270 > th dose independent rect. 22 16
868 214.39 atmosphere 995.0 270 > th dose independent rect. 22 16
870 214.39 radiation 30.0 720 > th dose dependent sin 12 NA
871 214.39 radiation 1.0 270 > th dose dependent sin 3 NA
872 214.39 wind 9.0 270 < th dose dependent rect. 2 7
885 214.41 temperature 10.0 270 > th dose independent rect. 8 7
886 214.41 atmosphere 1015.0 270 < th dose independent rect. 8 7
888 214.41 temperature 10.0 270 > th dose independent rect. 15 17
891 214.41 radiation 40.0 270 > th dose dependent sin 4 NA
902 214.43 humidity 90.0 14400 < th dose independent rect. 18 5
903 214.43 atmosphere 995.0 43200 < th dose independent rect. 2 9
904 214.43 atmosphere 995.0 43200 < th dose dependent rect. 4 4
908 214.44 radiation 1.0 90 > th dose independent rect. 9 8
922 214.46 radiation 20.0 10 < th dose independent rect. 4 20
926 214.47 wind 1.0 270 > th dose dependent rect. 14 9
927 214.48 precipitation 0.1 270 < th dose independent rect. 8 7
931 214.48 precipitation 0.1 270 < th dose dependent rect. 8 7
935 214.49 radiation 20.0 1440 < th dose independent rect. 15 6
950 214.51 atmosphere 995.0 43200 < th dose dependent sin 8 NA
954 214.51 temperature 10.0 90 > th dose dependent rect. 17 16
955 214.51 radiation 1.0 90 > th dose dependent rect. 10 21
958 214.52 precipitation 0.1 270 < th dose independent rect. 9 17
965 214.52 precipitation 0.1 270 < th dose dependent rect. 9 17
974 214.53 radiation 1.0 90 > th dose dependent sin 21 NA
977 214.53 radiation 40.0 270 > th dose dependent no NA NA