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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0565000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.0529) R2 : 0.311
β1 : 1.65 (0.225) R2dD : 0.137 R2D : 0.00714
β2 : 1.48 (0.126) R2dC : 0.209 R2C : 0.203
β3 : 0.299 (0.23) R2dE : 0.00447 R2E : -0.0103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.97 (0.684) R2dD*E : 0.109 R2D*E : -0.0433
γ1 : 0.0705 (0.114) R2dN8 : 0.000961 R2N8 : -0.00866
σ : 0.907
deviance : 379.41
__
_____
C
peak time of C : 17.1
E
wheather : temperature
threshold : 20.1
memory length : 1497
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
369.13 0.903 4.03 1.66 1.46 0.31 2.09 4.12 0.0643 17 20.01 1442 -- --
390.9 0.921 4.13 0.773 1.46 0.503 2.06 -- -0.089 17 30.35 3916 -- --
379.41 0.907 4.03 1.65 1.48 0.299 -- 3.97 0.0705 17.1 20.1 1497 -- --
399.58 0.931 4.12 0.794 1.5 0.55 -- -- -0.018 17 30.3 3948 -- --
493.95 1.04 4.01 1.66 -- 0.291 -- 4.15 0.0486 -- 20.3 1507 -- --
400.82 0.939 4.16 0.892 1.48 -- 1.82 -- -0.133 17 -- -- -- --
409.08 0.947 4.16 0.894 1.5 -- -- -- -0.125 17.2 -- -- -- --
484.45 1.03 4.15 0.677 -- 0.754 -- -- -0.203 -- 28.55 1950 -- --
413.74 0.947 4.16 -- 1.49 0.698 -- -- -0.123 17 29.81 3867 -- --
526.58 1.07 4.14 0.841 -- -- -- -- -0.162 -- -- -- -- --
430.14 0.97 4.18 -- 1.48 -- -- -- -0.224 17.2 -- -- -- --
495.8 1.04 4.17 -- -- 0.812 -- -- -0.281 -- 28.69 1955 -- --
545.24 1.09 4.16 -- -- -- -- -- -0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 363.46 temperature 30 720 < th dose dependent sin 15 NA
3 363.84 temperature 30 720 < th dose dependent rect. 13 16
4 363.91 temperature 30 720 < th dose dependent rect. 17 10
6 363.96 temperature 20 270 < th dose dependent rect. 22 7
8 364.12 temperature 20 720 < th dose dependent rect. 19 2
11 364.23 temperature 20 720 < th dose dependent rect. 18 5
12 364.27 temperature 20 270 < th dose dependent rect. 21 9
14 364.41 temperature 20 270 < th dose dependent sin 11 NA
19 364.59 temperature 20 270 < th dose dependent rect. 20 12
21 364.63 temperature 30 720 < th dose dependent rect. 18 8
26 364.68 temperature 15 10 > th dose dependent sin 8 NA
50 365.47 wind 1 14400 < th dose dependent rect. 2 1
52 365.48 temperature 20 90 < th dose dependent rect. 23 10
78 365.85 wind 9 43200 > th dose dependent rect. 17 15
87 366.02 wind 9 43200 > th dose independent rect. 18 13
101 366.17 temperature 25 10 < th dose dependent sin 7 NA
109 366.41 wind 9 43200 < th dose independent rect. 18 13
135 366.81 temperature 20 270 < th dose dependent rect. 12 20
154 367.01 temperature 20 720 < th dose dependent rect. 11 12
157 367.05 humidity 80 14400 > th dose dependent rect. 5 1
159 367.09 temperature 10 1440 > th dose dependent rect. 7 1
168 367.17 temperature 30 1440 < th dose dependent rect. 7 1
189 367.31 wind 1 14400 < th dose independent rect. 2 1
207 367.46 wind 9 43200 > th dose independent rect. 20 11
210 367.47 temperature 10 720 > th dose dependent rect. 16 16
220 367.61 temperature 20 4320 > th dose independent rect. 21 1
221 367.61 humidity 90 14400 < th dose independent rect. 3 4
227 367.65 temperature 20 4320 > th dose independent rect. 20 3
236 367.75 temperature 20 1440 > th dose independent rect. 20 19
238 367.77 wind 9 43200 < th dose independent rect. 20 11
256 367.89 temperature 30 90 < th dose dependent rect. 23 7
259 367.91 temperature 30 1440 < th dose dependent rect. 20 1
264 367.94 temperature 10 1440 > th dose dependent rect. 20 1
282 368.03 temperature 20 4320 > th dose independent rect. 18 6
291 368.06 temperature 20 4320 < th dose independent rect. 20 3
314 368.21 humidity 50 43200 < th dose dependent rect. 5 3
316 368.22 temperature 20 1440 < th dose independent rect. 20 19
364 368.55 wind 1 14400 > th dose independent rect. 2 1
390 368.69 humidity 90 14400 > th dose independent rect. 4 3
401 368.74 temperature 10 720 > th dose dependent rect. 15 19
413 368.80 humidity 50 43200 < th dose dependent rect. 20 12
415 368.81 temperature 15 4320 < th dose dependent rect. 24 11
423 368.84 temperature 20 1440 > th dose independent rect. 8 22
432 368.87 temperature 15 4320 < th dose dependent sin 5 NA
443 368.90 wind 7 43200 < th dose independent rect. 6 1
458 368.98 temperature 20 1440 > th dose independent rect. 12 22
459 368.98 temperature 20 1440 > th dose independent rect. 5 23
475 369.03 wind 7 43200 > th dose independent rect. 6 1
484 369.05 radiation 1 1440 < th dose independent rect. 11 3
488 369.05 radiation 1 1440 < th dose dependent rect. 11 3
517 369.13 temperature 20 1440 > th dose independent no NA NA
519 369.13 temperature 15 4320 < th dose dependent rect. 23 8
524 369.14 temperature 20 1440 > th dose independent rect. 1 23
548 369.22 temperature 20 4320 < th dose independent rect. 21 1
551 369.23 temperature 20 1440 > th dose independent rect. 12 16
588 369.31 humidity 80 14400 > th dose dependent rect. 2 5
612 369.37 temperature 20 1440 < th dose independent rect. 8 22
654 369.47 wind 9 43200 > th dose dependent sin 12 NA
661 369.49 temperature 20 720 < th dose independent rect. 12 15
686 369.55 temperature 20 1440 < th dose independent rect. 12 22
715 369.60 temperature 20 1440 < th dose independent rect. 11 19
724 369.61 temperature 10 720 > th dose dependent sin 12 NA
725 369.61 temperature 10 720 > th dose dependent rect. 20 7
730 369.62 wind 9 43200 > th dose independent sin 11 NA
741 369.64 temperature 20 1440 < th dose independent rect. 5 23
763 369.71 temperature 20 1440 < th dose independent no NA NA
774 369.74 temperature 20 1440 < th dose independent rect. 24 23
807 369.82 temperature 20 1440 < th dose independent rect. 1 13
848 369.90 radiation 1 1440 > th dose independent rect. 12 3
860 369.90 temperature 10 4320 > th dose dependent rect. 18 20
883 369.94 temperature 15 4320 < th dose dependent rect. 6 1
897 369.97 temperature 20 1440 > th dose independent sin 5 NA