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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0560700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0126) R2 : 0.00152
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0221 (0.0266) R2dN8 : 0.00196 R2N8 : 0.00152
σ : 0.238
deviance : 25.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.93 0.225 2.88 -0.0439 0.0295 -0.324 0.096 1.45 0.0117 16.4 1.044 16 -- --
24.64 0.231 2.87 0.0127 0.0133 -0.217 0.249 -- 0.027 16.3 1.008 16 -- --
22.95 0.223 2.88 -0.0391 0.0312 -0.325 -- 1.47 0.0144 17.2 1.025 16 -- --
24.81 0.232 2.86 0.0148 0.0192 -0.199 -- -- 0.0291 17.3 1.123 16 -- --
22.99 0.223 2.88 -0.0425 -- -0.307 -- 1.46 0.0111 -- 1.034 16 -- --
25.64 0.237 2.87 0.0367 0.0452 -- -0.223 -- 0.0245 3.14 -- -- -- --
25.8 0.238 2.87 0.0413 0.0452 -- -- -- 0.0257 3.65 -- -- -- --
24.83 0.232 2.86 0.0156 -- -0.189 -- -- 0.0287 -- 1.125 16 -- --
24.82 0.232 2.87 -- 0.02 -0.2 -- -- 0.0276 18.1 1.138 16 -- --
25.91 0.238 2.87 0.0432 -- -- -- -- 0.0269 -- -- -- -- --
25.85 0.238 2.87 -- 0.046 -- -- -- 0.0211 3.64 -- -- -- --
24.84 0.232 2.87 -- -- -0.191 -- -- 0.027 -- 1.133 16 -- --
25.96 0.238 2.87 -- -- -- -- -- 0.0221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.04 temperature 20.0 30 > th dose dependent rect. 2 1
2 16.07 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 16.09 temperature 20.0 30 > th dose independent rect. 2 1
6 16.10 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 16.13 wind 3.0 30 < th dose independent rect. 2 1
10 16.13 wind 3.0 30 < th dose dependent rect. 2 1
18 16.19 temperature 10.0 30 > th dose independent rect. 2 1
20 16.19 temperature 30.0 30 < th dose independent rect. 2 1
21 16.19 humidity 50.0 30 > th dose independent rect. 2 1
26 16.19 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 16.19 radiation 1.0 30 < th dose independent rect. 2 1
33 16.19 precipitation 0.1 30 < th dose independent rect. 2 1
34 16.19 temperature 10.0 30 > th dose independent rect. 3 23
35 16.19 humidity 50.0 30 > th dose dependent rect. 2 1
37 16.19 radiation 1.0 30 < th dose dependent rect. 2 1
42 16.19 precipitation 0.1 30 < th dose dependent rect. 2 1
49 16.39 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 16.53 temperature 30.0 30 < th dose dependent rect. 2 1
53 16.70 wind 1.0 30 > th dose independent rect. 2 1
66 17.03 radiation 10.0 14400 < th dose dependent rect. 3 1
74 17.04 wind 9.0 1440 < th dose independent rect. 3 1
75 17.04 temperature 10.0 1440 > th dose independent rect. 3 1
78 17.04 temperature 30.0 1440 < th dose independent rect. 3 1
82 17.04 humidity 50.0 1440 > th dose independent rect. 3 1
91 17.04 atmosphere 995.0 1440 > th dose independent rect. 3 1
92 17.04 radiation 1.0 1440 < th dose independent rect. 3 1
112 17.04 temperature 10.0 1440 > th dose independent rect. 4 23
115 17.04 radiation 1.0 1440 < th dose dependent rect. 3 1
162 17.68 atmosphere 995.0 30 > th dose independent rect. 3 23
170 18.07 wind 9.0 30 < th dose independent rect. 3 23
172 18.14 precipitation 0.1 30 < th dose independent rect. 3 23
174 18.14 precipitation 0.1 30 < th dose dependent rect. 3 23
197 20.29 humidity 50.0 30 > th dose independent rect. 3 23
210 21.09 temperature 30.0 30 < th dose independent rect. 3 23
243 21.35 temperature 25.0 270 > th dose independent rect. 23 4
269 21.85 temperature 25.0 270 > th dose dependent rect. 23 4
286 22.06 atmosphere 1015.0 30 < th dose independent rect. 3 23
304 22.27 wind 1.0 10 < th dose independent rect. 14 13
321 22.33 humidity 90.0 90 < th dose independent rect. 2 1
340 22.48 wind 1.0 30 > th dose independent rect. 3 23
358 22.66 wind 1.0 10 > th dose independent sin 16 NA
486 23.16 wind 3.0 10 < th dose dependent rect. 22 5
488 23.17 humidity 90.0 10 > th dose independent rect. 24 3
536 23.36 wind 9.0 30 < th dose dependent rect. 3 23
537 23.37 wind 1.0 10 > th dose independent no NA NA
540 23.37 wind 3.0 30 < th dose dependent rect. 16 11
545 23.39 wind 1.0 10 < th dose independent rect. 2 10
625 23.54 temperature 10.0 30 > th dose dependent rect. 3 23
707 23.66 wind 1.0 10 > th dose independent rect. 19 23
747 23.73 wind 1.0 10 < th dose independent sin 16 NA
769 23.77 radiation 20.0 30 < th dose dependent rect. 3 23
770 23.78 wind 1.0 30 > th dose dependent rect. 2 1
790 23.82 radiation 10.0 30 < th dose independent rect. 3 23