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Os06g0559500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.022) R2 : 0.847
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.98 (0.0905) R2dC : 1.64 R2C : 0.52
β3 : 1.62 (0.0845) R2dE : 0.308 R2E : -0.793
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.312 (0.0463) R2dN8 : 0.0198 R2N8 : 0.00115
σ : 0.412
deviance : 78.34
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_____
C
peak time of C : 17
E
wheather : radiation
threshold : 13.38
memory length : 13
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.913
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.13 0.399 10.8 -0.141 3.93 1.59 2.2 1.4 0.294 17 12.02 14 0.987 --
74.84 0.403 10.8 -0.179 3.98 1.62 1.09 -- 0.29 17 12.93 13 0.779 --
78.63 0.413 10.8 -0.147 4.17 1.85 -- 0.14 0.309 16.7 16.36 14 1.96 --
77.59 0.41 10.8 -0.168 3.97 1.61 -- -- 0.291 17 13.17 13 0.861 --
106.41 0.48 10.8 -0.119 -- -2.67 -- -1.16 0.254 -- 119.7 303 1.83 --
99.83 0.468 10.8 -0.15 2.78 -- 1.13 -- 0.239 18.1 -- -- -- --
102.97 0.475 10.8 -0.161 2.79 -- -- -- 0.243 18.1 -- -- -- --
102.62 0.472 10.7 -0.204 -- -2.82 -- -- 0.207 -- 126.2 526 4.14 --
78.34 0.412 10.8 -- 3.98 1.62 -- -- 0.312 17 13.38 13 0.913 --
506.17 1.05 10.8 -0.241 -- -- -- -- 0.18 -- -- -- -- --
103.65 0.476 10.8 -- 2.79 -- -- -- 0.261 18.1 -- -- -- --
103.06 0.473 10.8 -- -- -2.84 -- -- 0.255 -- 107 529 4.14 --
507.7 1.05 10.8 -- -- -- -- -- 0.207 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.88 radiation 1.0 270 < th dose independent rect. 21 17
2 62.00 radiation 1.0 270 < th dose dependent rect. 21 17
20 65.66 radiation 1.0 90 < th dose independent rect. 23 17
25 66.19 radiation 30.0 270 < th dose independent rect. 15 7
26 66.41 radiation 40.0 270 < th dose dependent rect. 15 7
28 66.57 temperature 15.0 270 > th dose independent rect. 5 16
30 66.60 precipitation 0.1 270 < th dose independent rect. 2 9
31 66.60 precipitation 0.1 270 < th dose dependent rect. 2 9
32 66.62 temperature 15.0 270 > th dose independent rect. 16 6
35 66.80 radiation 1.0 90 < th dose independent rect. 23 9
42 67.32 radiation 1.0 90 < th dose dependent rect. 23 17
43 67.34 radiation 10.0 90 < th dose dependent rect. 23 10
50 67.43 atmosphere 995.0 270 > th dose independent rect. 16 6
51 67.43 humidity 50.0 270 > th dose independent rect. 22 17
70 68.02 wind 9.0 270 < th dose independent rect. 22 18
72 68.05 radiation 30.0 270 < th dose dependent rect. 16 5
73 68.09 temperature 15.0 270 > th dose independent rect. 17 16
76 68.11 temperature 15.0 270 > th dose independent rect. 16 18
81 68.12 temperature 10.0 270 > th dose independent rect. 22 18
83 68.16 atmosphere 995.0 270 > th dose independent rect. 17 16
85 68.18 temperature 15.0 270 > th dose independent rect. 2 9
101 68.56 wind 9.0 270 < th dose independent rect. 16 6
102 68.57 precipitation 0.1 270 < th dose independent rect. 17 16
103 68.57 precipitation 0.1 270 < th dose dependent rect. 17 16
109 68.63 wind 9.0 270 < th dose independent rect. 9 8
112 68.79 temperature 10.0 270 > th dose dependent rect. 9 7
115 68.83 humidity 50.0 270 > th dose independent rect. 17 16
117 68.86 temperature 10.0 270 > th dose independent rect. 9 8
118 68.86 atmosphere 1015.0 270 < th dose independent rect. 9 8
120 68.89 temperature 30.0 270 < th dose independent rect. 3 8
121 68.91 radiation 10.0 10 < th dose dependent rect. 23 10
122 68.93 atmosphere 995.0 270 > th dose independent rect. 22 17
125 69.02 wind 1.0 270 > th dose independent rect. 16 6
126 69.04 precipitation 0.1 270 < th dose independent rect. 9 8
127 69.04 precipitation 0.1 270 < th dose dependent rect. 9 8
130 69.12 wind 9.0 270 < th dose independent rect. 17 16
136 69.20 atmosphere 1015.0 270 < th dose independent rect. 16 6
137 69.27 atmosphere 995.0 270 > th dose independent rect. 16 18
144 69.41 radiation 10.0 10 < th dose dependent rect. 23 17
147 69.43 radiation 10.0 10 < th dose dependent rect. 23 15
151 69.49 atmosphere 1015.0 270 < th dose independent rect. 5 16
159 69.64 wind 9.0 270 < th dose independent rect. 21 8
160 69.64 temperature 10.0 270 > th dose independent rect. 21 8
161 69.64 temperature 30.0 270 < th dose independent rect. 21 8
162 69.64 humidity 50.0 270 > th dose independent rect. 21 8
165 69.64 atmosphere 995.0 270 > th dose independent rect. 21 8
166 69.64 radiation 20.0 270 < th dose independent rect. 21 8
177 69.69 wind 9.0 270 < th dose independent rect. 11 16
184 69.73 wind 9.0 270 < th dose independent rect. 10 6
190 69.82 wind 1.0 270 > th dose independent rect. 9 8
194 69.83 humidity 70.0 10 > th dose dependent rect. 23 17
195 69.85 precipitation 0.1 270 < th dose independent rect. 11 16
196 69.85 precipitation 0.1 270 < th dose dependent rect. 11 16
200 69.91 temperature 30.0 270 < th dose independent rect. 16 18
202 69.93 precipitation 0.1 270 < th dose independent rect. 16 6
203 69.93 precipitation 0.1 270 < th dose dependent rect. 16 6
207 69.97 precipitation 0.1 270 < th dose independent rect. 16 18
208 69.97 precipitation 0.1 270 < th dose dependent rect. 16 18
210 69.98 temperature 10.0 270 > th dose independent rect. 10 6
211 69.98 atmosphere 1015.0 270 < th dose independent rect. 10 6
215 70.03 wind 9.0 270 < th dose independent rect. 2 9
223 70.08 atmosphere 995.0 270 > th dose independent rect. 2 9
224 70.08 atmosphere 1015.0 270 < th dose independent rect. 2 9
225 70.08 temperature 10.0 270 > th dose independent rect. 11 15
229 70.15 precipitation 0.1 270 < th dose independent rect. 10 6
231 70.15 precipitation 0.1 270 < th dose dependent rect. 10 6
245 70.28 wind 9.0 270 < th dose independent rect. 16 18
253 70.38 atmosphere 1015.0 270 < th dose independent rect. 22 18
279 70.47 humidity 50.0 270 > th dose independent rect. 16 6
280 70.49 humidity 70.0 10 > th dose dependent rect. 23 15
299 70.62 humidity 50.0 270 > th dose independent rect. 10 6
301 70.65 atmosphere 995.0 270 > th dose independent rect. 4 17
320 70.80 wind 9.0 270 < th dose independent rect. 5 16
321 70.80 precipitation 0.1 270 < th dose independent rect. 22 18
322 70.80 precipitation 0.1 270 < th dose dependent rect. 22 18
336 70.89 temperature 10.0 270 > th dose dependent rect. 22 18
337 70.91 atmosphere 995.0 270 > th dose dependent rect. 16 5
351 71.14 precipitation 0.1 270 < th dose independent rect. 4 17
352 71.14 precipitation 0.1 270 < th dose dependent rect. 4 17
361 71.26 humidity 50.0 270 > th dose independent rect. 3 8
384 71.48 temperature 30.0 270 < th dose independent rect. 16 5
390 71.57 wind 1.0 270 > th dose independent rect. 22 18
397 71.63 temperature 10.0 270 > th dose dependent rect. 10 16
402 71.70 atmosphere 995.0 270 > th dose independent rect. 10 6
405 71.71 radiation 1.0 270 > th dose independent rect. 10 6
419 71.88 humidity 50.0 270 > th dose dependent rect. 21 7
425 71.92 radiation 1.0 270 > th dose independent rect. 9 8
431 71.93 temperature 15.0 270 > th dose independent rect. 15 20
448 72.10 radiation 40.0 270 < th dose independent rect. 17 16
449 72.12 humidity 50.0 90 > th dose dependent rect. 23 17
457 72.19 precipitation 0.1 270 < th dose independent rect. 21 7
460 72.19 precipitation 0.1 270 < th dose dependent rect. 21 7
477 72.28 wind 9.0 270 < th dose dependent rect. 3 8
506 72.52 temperature 15.0 90 > th dose independent rect. 19 16
550 72.93 radiation 10.0 10 < th dose dependent sin 7 NA
552 72.95 radiation 1.0 30 > th dose independent rect. 5 7
579 73.16 humidity 70.0 10 > th dose dependent rect. 23 13
602 73.32 humidity 80.0 10 > th dose independent rect. 23 17
660 73.77 humidity 50.0 270 > th dose dependent rect. 16 5
724 74.00 wind 9.0 270 < th dose dependent rect. 16 5
738 74.09 radiation 1.0 270 < th dose dependent sin 10 NA
739 74.10 wind 1.0 270 > th dose independent rect. 21 8
766 74.22 temperature 10.0 270 > th dose dependent rect. 21 7
770 74.24 precipitation 0.1 270 < th dose independent rect. 3 19
777 74.24 precipitation 0.1 270 < th dose dependent rect. 3 19
791 74.34 atmosphere 1015.0 270 < th dose independent rect. 16 18
795 74.38 radiation 40.0 270 < th dose dependent rect. 16 17
804 74.42 humidity 50.0 270 > th dose dependent rect. 22 5
808 74.46 radiation 1.0 90 > th dose independent sin 7 NA
841 74.57 radiation 1.0 90 < th dose independent sin 7 NA
938 74.76 precipitation 0.1 270 < th dose independent rect. 22 5
940 74.76 precipitation 0.1 270 < th dose dependent rect. 22 5
944 74.80 radiation 1.0 270 < th dose independent sin 10 NA
966 74.87 radiation 1.0 30 > th dose independent sin 5 NA
974 74.91 radiation 1.0 270 > th dose independent sin 10 NA
985 74.95 wind 9.0 270 < th dose dependent rect. 21 7