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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0559000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0486) R2 : 0.0788
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.667 (0.122) R2dC : 0.0609 R2C : 0.0543
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.313 (0.102) R2dN8 : 0.0245 R2N8 : 0.0179
σ : 0.914
deviance : 382.14
__
_____
C
peak time of C : 8.65
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
364.64 0.889 3.65 0.203 0.526 -0.366 1.63 1.25 -0.271 7.88 20 10 -- --
369.41 0.902 3.66 0.161 0.54 -0.453 0.945 -- -0.28 6.58 20 10 -- --
367.19 0.899 3.66 0.182 0.548 -0.523 -- 0.668 -0.289 6.24 19.99 13 -- --
369.55 0.901 3.66 0.146 0.549 -0.516 -- -- -0.292 6.22 19.99 13 -- --
382.78 0.916 3.67 0.198 -- -0.518 -- 0.671 -0.277 -- 20 13 -- --
379.34 0.913 3.66 0.147 0.67 -- 0.794 -- -0.294 8.55 -- -- -- --
381.35 0.914 3.66 0.174 0.666 -- -- -- -0.293 8.67 -- -- -- --
385.17 0.918 3.67 0.161 -- -0.51 -- -- -0.28 -- 19.99 13 -- --
370.11 0.901 3.66 -- 0.551 -0.521 -- -- -0.308 6.18 19.98 13 -- --
406.41 0.942 3.67 0.175 -- -- -- -- -0.288 -- -- -- -- --
382.14 0.914 3.66 -- 0.667 -- -- -- -0.313 8.65 -- -- -- --
385.85 0.918 3.68 -- -- -0.511 -- -- -0.298 -- 19.99 13 -- --
407.22 0.942 3.68 -- -- -- -- -- -0.307 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 349.36 temperature 25.0 30 > th dose independent rect. 4 5
10 351.24 temperature 20.0 30 > th dose dependent rect. 3 6
16 351.93 radiation 20.0 90 < th dose independent rect. 3 12
26 353.04 radiation 20.0 10 < th dose independent rect. 3 11
32 353.46 radiation 10.0 270 < th dose independent rect. 3 6
34 353.78 temperature 20.0 270 > th dose independent rect. 3 4
36 353.96 radiation 20.0 10 < th dose independent rect. 3 21
38 354.00 temperature 20.0 270 > th dose dependent rect. 4 2
43 354.34 temperature 20.0 270 > th dose independent rect. 4 2
53 355.18 radiation 10.0 270 < th dose independent rect. 3 8
55 355.29 temperature 25.0 10 > th dose independent rect. 20 13
56 355.31 radiation 20.0 90 < th dose independent rect. 3 21
72 355.84 wind 1.0 30 > th dose independent rect. 13 20
81 356.29 wind 1.0 30 > th dose independent rect. 4 5
102 356.97 temperature 25.0 10 > th dose independent rect. 13 21
104 357.01 radiation 20.0 10 < th dose independent rect. 4 5
110 357.11 radiation 20.0 10 < th dose independent sin 3 NA
115 357.31 humidity 70.0 90 > th dose independent rect. 3 6
128 357.61 atmosphere 1000.0 90 > th dose independent rect. 9 18
138 357.81 radiation 1.0 720 < th dose dependent rect. 23 20
145 357.98 humidity 90.0 10 < th dose independent rect. 13 20
146 358.01 wind 1.0 90 > th dose independent rect. 13 11
147 358.03 humidity 50.0 4320 > th dose independent rect. 5 5
152 358.14 temperature 25.0 10 > th dose independent rect. 22 11
154 358.19 wind 1.0 270 > th dose independent rect. 4 1
161 358.30 temperature 10.0 90 > th dose dependent rect. 13 20
162 358.34 radiation 30.0 90 < th dose dependent rect. 3 12
170 358.42 temperature 25.0 10 > th dose independent rect. 6 3
173 358.44 humidity 50.0 90 > th dose independent rect. 9 18
174 358.46 wind 5.0 270 < th dose independent rect. 9 1
176 358.50 radiation 20.0 270 < th dose independent rect. 16 11
179 358.53 radiation 40.0 270 < th dose dependent rect. 16 11
182 358.58 temperature 15.0 270 > th dose independent rect. 16 11
187 358.67 wind 9.0 270 < th dose independent rect. 16 11
193 358.78 temperature 10.0 1440 > th dose independent rect. 5 5
196 358.78 atmosphere 995.0 1440 > th dose independent rect. 5 5
197 358.78 atmosphere 1015.0 1440 < th dose independent rect. 5 5
198 358.78 temperature 10.0 1440 > th dose independent rect. 10 19
207 358.87 radiation 20.0 90 < th dose independent sin 3 NA
216 359.02 temperature 15.0 270 > th dose independent rect. 3 13
219 359.05 radiation 10.0 270 < th dose dependent rect. 3 5
222 359.07 radiation 40.0 270 < th dose independent rect. 16 11
224 359.07 atmosphere 1015.0 270 < th dose independent rect. 3 13
228 359.08 temperature 10.0 90 > th dose dependent rect. 13 11
236 359.18 temperature 10.0 90 > th dose dependent rect. 22 11
244 359.32 radiation 20.0 10 < th dose independent rect. 6 3
253 359.41 atmosphere 995.0 270 > th dose independent rect. 16 11
265 359.52 temperature 20.0 10 > th dose dependent rect. 20 13
274 359.64 precipitation 0.1 270 < th dose independent rect. 3 13
276 359.64 precipitation 0.1 270 < th dose dependent rect. 3 13
279 359.65 wind 9.0 90 < th dose independent rect. 24 13
281 359.68 radiation 10.0 270 < th dose dependent rect. 3 11
285 359.70 atmosphere 995.0 90 > th dose dependent rect. 3 6
299 359.82 radiation 30.0 10 < th dose dependent rect. 4 10
307 359.86 wind 9.0 270 < th dose independent rect. 3 13
314 359.89 atmosphere 1015.0 90 < th dose independent rect. 9 18
317 359.91 wind 7.0 720 < th dose independent rect. 1 10
318 359.91 temperature 30.0 90 < th dose independent rect. 9 18
323 359.95 precipitation 0.1 270 < th dose independent rect. 12 11
324 359.95 precipitation 0.1 270 < th dose dependent rect. 12 11
326 359.96 wind 1.0 90 > th dose independent rect. 11 22
328 360.00 precipitation 0.1 90 < th dose independent rect. 24 13
329 360.00 precipitation 0.1 90 < th dose dependent rect. 24 13
343 360.13 atmosphere 1015.0 90 < th dose independent rect. 24 13
347 360.15 temperature 10.0 90 > th dose independent rect. 13 11
348 360.15 temperature 10.0 90 > th dose independent rect. 24 13
349 360.15 atmosphere 995.0 90 > th dose independent rect. 24 13
357 360.21 temperature 30.0 720 < th dose dependent rect. 1 1
366 360.27 atmosphere 995.0 270 > th dose dependent rect. 9 2
367 360.29 temperature 15.0 30 > th dose independent rect. 9 19
379 360.37 atmosphere 1000.0 90 > th dose independent rect. 9 4
383 360.40 wind 9.0 90 < th dose independent rect. 9 18
386 360.41 atmosphere 995.0 90 > th dose dependent rect. 9 13
417 360.61 atmosphere 995.0 90 > th dose dependent rect. 9 5
418 360.62 radiation 40.0 10 < th dose dependent rect. 4 5
423 360.67 wind 9.0 90 < th dose independent rect. 3 6
424 360.67 temperature 10.0 90 > th dose independent rect. 3 6
426 360.67 humidity 50.0 90 > th dose independent rect. 3 6
427 360.67 atmosphere 995.0 90 > th dose independent rect. 3 6
428 360.67 atmosphere 1015.0 90 < th dose independent rect. 3 6
435 360.72 precipitation 0.1 90 < th dose independent rect. 3 6
436 360.72 precipitation 0.1 90 < th dose dependent rect. 3 6
444 360.76 wind 9.0 90 < th dose independent rect. 13 11
450 360.78 radiation 30.0 30 < th dose independent rect. 11 22
475 360.88 atmosphere 1000.0 30 > th dose independent rect. 9 13
478 360.89 radiation 40.0 720 < th dose dependent rect. 16 3
499 360.95 humidity 50.0 90 > th dose independent rect. 24 13
500 360.95 precipitation 0.1 90 < th dose independent rect. 9 18
502 360.95 precipitation 0.1 90 < th dose dependent rect. 9 18
506 360.98 humidity 70.0 30 > th dose independent rect. 6 3
513 361.01 humidity 90.0 10 < th dose independent rect. 3 6
520 361.03 precipitation 0.1 720 < th dose independent rect. 21 10
523 361.03 precipitation 0.1 720 < th dose dependent rect. 21 10
526 361.04 humidity 90.0 30 > th dose dependent rect. 2 1
527 361.04 radiation 40.0 10 < th dose dependent rect. 3 21
530 361.06 temperature 30.0 90 < th dose independent rect. 3 6
532 361.07 temperature 10.0 720 > th dose dependent rect. 21 2
547 361.16 atmosphere 995.0 10 > th dose dependent rect. 10 12
554 361.18 radiation 40.0 10 < th dose dependent rect. 6 3
555 361.19 temperature 10.0 10 > th dose dependent rect. 14 10
556 361.20 wind 9.0 270 < th dose dependent rect. 9 2
569 361.24 precipitation 0.1 720 < th dose independent rect. 3 20
572 361.24 precipitation 0.1 720 < th dose dependent rect. 3 20
580 361.28 humidity 50.0 270 > th dose independent rect. 16 11
586 361.31 wind 7.0 720 < th dose independent rect. 23 4
590 361.32 wind 9.0 10 < th dose dependent rect. 9 6
594 361.34 temperature 20.0 270 > th dose independent rect. 11 22
640 361.48 atmosphere 995.0 30 > th dose dependent rect. 13 20
641 361.50 temperature 10.0 1440 > th dose independent rect. 14 11
644 361.50 temperature 10.0 1440 > th dose independent rect. 1 13
647 361.50 atmosphere 995.0 1440 > th dose independent rect. 1 13
690 361.67 radiation 20.0 720 < th dose independent rect. 16 3
702 361.68 temperature 20.0 720 > th dose independent rect. 21 2
708 361.69 radiation 20.0 720 < th dose independent rect. 21 10
724 361.75 atmosphere 1000.0 10 > th dose independent rect. 9 21
730 361.78 radiation 40.0 90 < th dose dependent rect. 3 21
733 361.79 humidity 70.0 90 > th dose independent rect. 22 11
739 361.82 wind 9.0 720 < th dose independent rect. 16 19
744 361.84 radiation 10.0 270 < th dose independent rect. 19 13
750 361.85 radiation 1.0 90 > th dose independent rect. 14 19
765 361.86 wind 7.0 30 < th dose independent rect. 24 15
767 361.86 humidity 60.0 270 > th dose dependent rect. 3 4
778 361.90 wind 5.0 10 < th dose independent rect. 9 6
779 361.90 humidity 70.0 720 > th dose independent rect. 21 10
804 361.95 atmosphere 995.0 4320 > th dose independent rect. 10 4
815 361.98 temperature 10.0 720 > th dose independent rect. 1 10
816 361.98 atmosphere 995.0 720 > th dose independent rect. 1 10
821 361.98 temperature 10.0 720 > th dose independent rect. 11 14
826 362.00 humidity 50.0 720 > th dose independent rect. 1 10
841 362.06 temperature 25.0 30 < th dose dependent rect. 1 22
866 362.13 radiation 1.0 720 < th dose independent rect. 23 20
877 362.17 atmosphere 995.0 270 > th dose dependent rect. 3 3
880 362.18 atmosphere 1015.0 270 < th dose independent rect. 7 20
907 362.24 radiation 20.0 90 > th dose independent rect. 9 4
911 362.25 humidity 50.0 90 > th dose dependent rect. 3 6
914 362.26 temperature 10.0 720 > th dose independent rect. 9 10
915 362.26 atmosphere 1015.0 720 < th dose independent rect. 9 10
916 362.26 temperature 10.0 720 > th dose independent rect. 19 14
917 362.26 humidity 50.0 720 > th dose independent rect. 19 14
918 362.26 atmosphere 995.0 720 > th dose independent rect. 19 14
925 362.27 humidity 90.0 10 < th dose independent rect. 13 18
931 362.28 radiation 40.0 90 < th dose dependent rect. 3 6
937 362.32 radiation 20.0 270 > th dose independent rect. 10 1
948 362.35 precipitation 0.1 720 < th dose independent rect. 23 4
953 362.35 precipitation 0.1 720 < th dose dependent rect. 23 4
963 362.39 wind 9.0 720 < th dose independent rect. 9 10
964 362.39 precipitation 0.1 270 < th dose independent rect. 16 11
965 362.39 precipitation 0.1 270 < th dose dependent rect. 16 11
968 362.40 temperature 15.0 30 > th dose independent rect. 9 21
971 362.42 temperature 10.0 720 > th dose independent rect. 21 10
972 362.42 temperature 30.0 720 < th dose independent rect. 21 10
973 362.42 humidity 50.0 720 > th dose independent rect. 21 10
975 362.42 atmosphere 995.0 720 > th dose independent rect. 21 10
977 362.42 temperature 10.0 720 > th dose independent rect. 7 14
984 362.43 wind 9.0 270 < th dose independent rect. 7 20
993 362.47 wind 7.0 90 < th dose independent rect. 9 5
994 362.47 wind 1.0 90 > th dose independent rect. 4 14