Os06g0557700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0557700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.15 | 0.699 | 5.76 | 0.197 | 1.39 | -3.9 | 0.844 | -3.78 | 0.507 | 2.81 | 0.9993 | 1459 | -- | -- |
| 226.92 | 0.702 | 5.82 | -0.105 | 1.47 | -3.21 | 0.724 | -- | 0.46 | 2.68 | 1.35 | 1471 | -- | -- |
| 223.24 | 0.696 | 5.79 | 0.146 | 1.4 | -3.92 | -- | -3.52 | 0.457 | 2.7 | 0.8977 | 1458 | -- | -- |
| 228.59 | 0.704 | 5.82 | -0.179 | 1.5 | -3.26 | -- | -- | 0.44 | 2.6 | 1.352 | 1475 | -- | -- |
| 299.56 | 0.806 | 5.79 | 0.29 | -- | -3.57 | -- | -3.4 | 0.414 | -- | 1.207 | 2826 | -- | -- |
| 331.81 | 0.854 | 5.72 | 0.545 | 1.3 | -- | 1.15 | -- | 0.847 | 3.25 | -- | -- | -- | -- |
| 336.08 | 0.859 | 5.73 | 0.523 | 1.3 | -- | -- | -- | 0.84 | 3.22 | -- | -- | -- | -- |
| 298.39 | 0.805 | 5.85 | -0.0213 | -- | -3.09 | -- | -- | 0.33 | -- | 2.17 | 2817 | -- | -- |
| 229.33 | 0.705 | 5.82 | -- | 1.49 | -3.17 | -- | -- | 0.47 | 2.61 | 1.364 | 1475 | -- | -- |
| 432.71 | 0.972 | 5.73 | 0.578 | -- | -- | -- | -- | 0.874 | -- | -- | -- | -- | -- |
| 343.28 | 0.867 | 5.74 | -- | 1.32 | -- | -- | -- | 0.782 | 3.22 | -- | -- | -- | -- |
| 298.4 | 0.805 | 5.85 | -- | -- | -3.09 | -- | -- | 0.332 | -- | 2.175 | 2819 | -- | -- |
| 441.53 | 0.981 | 5.74 | -- | -- | -- | -- | -- | 0.81 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.95 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 205.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 14 | 205.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 18 | 206.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 23 | 207.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 25 | 207.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 33 | 207.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 35 | 209.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 50 | 209.94 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 53 | 209.99 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 68 | 210.42 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 80 | 210.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 15 |
| 87 | 210.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 89 | 210.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 97 | 210.70 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 113 | 210.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 121 | 210.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 125 | 210.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 177 | 211.10 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 186 | 211.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 19 |
| 204 | 211.21 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 247 | 211.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 254 | 211.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 282 | 211.47 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 337 | 211.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 16 |
| 341 | 211.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 346 | 211.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 351 | 211.68 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 368 | 211.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 370 | 212.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 371 | 212.08 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 13 |
| 376 | 212.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 386 | 212.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 388 | 212.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 396 | 212.18 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 399 | 212.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 410 | 212.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 416 | 212.48 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 441 | 212.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 442 | 212.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 452 | 212.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 466 | 212.65 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 503 | 212.78 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 505 | 212.78 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 513 | 212.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 515 | 212.83 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 564 | 213.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 566 | 213.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 572 | 213.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 635 | 213.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 648 | 213.32 | radiation | 1 | 43200 | < th | dose independent | sin | 18 | NA |
| 650 | 213.33 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 681 | 213.42 | radiation | 1 | 43200 | > th | dose independent | sin | 17 | NA |
| 743 | 213.59 | wind | 7 | 43200 | > th | dose independent | sin | 21 | NA |
| 759 | 213.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 761 | 213.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 768 | 213.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 834 | 213.80 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 860 | 213.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 887 | 213.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 934 | 213.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 961 | 214.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 964 | 214.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 989 | 214.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 998 | 214.21 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |