Os06g0557100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0557100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.32 | 0.471 | 10.3 | 1.97 | 0.485 | -0.915 | 0.243 | 1.14 | 0.68 | 0.446 | 10.01 | 1349 | -- | -- |
| 102.64 | 0.472 | 10.3 | 1.89 | 0.515 | -1 | 0.445 | -- | 0.672 | 0.384 | 10.01 | 1343 | -- | -- |
| 100.56 | 0.467 | 10.3 | 1.97 | 0.485 | -0.915 | -- | 1.22 | 0.68 | 0.469 | 10.01 | 1349 | -- | -- |
| 103.22 | 0.473 | 10.3 | 1.84 | 0.537 | -0.933 | -- | -- | 0.671 | 0.424 | 10 | 1343 | -- | -- |
| 111.16 | 0.491 | 10.3 | 2.02 | -- | -0.85 | -- | 1.32 | 0.693 | -- | 10.01 | 1496 | -- | -- |
| 123.52 | 0.521 | 10.4 | 1.52 | 0.346 | -- | 0.213 | -- | 0.361 | 0.8 | -- | -- | -- | -- |
| 123.71 | 0.521 | 10.4 | 1.52 | 0.346 | -- | -- | -- | 0.36 | 0.853 | -- | -- | -- | -- |
| 111.66 | 0.492 | 10.3 | 1.73 | -- | -0.865 | -- | -- | 0.573 | -- | 10.01 | 1629 | -- | -- |
| 176.37 | 0.619 | 10.4 | -- | 0.451 | -0.521 | -- | -- | 0.336 | 0.953 | 29.95 | 2748 | -- | -- |
| 131.19 | 0.535 | 10.4 | 1.53 | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
| 184.27 | 0.635 | 10.4 | -- | 0.371 | -- | -- | -- | 0.191 | 1.04 | -- | -- | -- | -- |
| 162.54 | 0.594 | 10.5 | -- | -- | -0.874 | -- | -- | 0.272 | -- | 65.04 | 24828 | -- | -- |
| 192.82 | 0.648 | 10.4 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 11 | 99.43 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 12 | 99.51 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 14 | 99.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 17 | 99.54 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 31 | 99.71 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 56 | 99.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 58 | 99.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 78 | 100.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 86 | 100.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 126 | 100.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 129 | 100.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 185 | 100.60 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 187 | 100.60 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 222 | 100.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 235 | 100.80 | humidity | 90 | 1440 | < th | dose dependent | sin | 19 | NA |
| 245 | 100.82 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 263 | 100.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 267 | 100.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 268 | 100.89 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |
| 272 | 100.90 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 284 | 100.92 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 339 | 101.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 382 | 101.25 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 424 | 101.37 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 15 |
| 430 | 101.38 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 443 | 101.40 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 469 | 101.45 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 474 | 101.46 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 475 | 101.47 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 482 | 101.48 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 2 |
| 490 | 101.49 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 492 | 101.49 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 523 | 101.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 524 | 101.55 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 557 | 101.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 579 | 101.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 590 | 101.66 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 759 | 101.89 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 761 | 101.89 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 780 | 101.90 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 972 | 102.14 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 16 |
| 986 | 102.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 17 |