FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0556200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Amino acid permease I (Amino acid transporter) (F19C14.3 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0207) R2 : 0.00349
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0549 (0.0435) R2dN8 : 0.0045 R2N8 : 0.00349
σ : 0.389
deviance : 69.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.77 0.381 2.79 -0.0868 0.0364 -0.441 -0.214 1.11 0.0985 3.24 0.4878 5708 -- --
66.97 0.381 2.78 -0.139 0.0321 -0.377 -0.23 -- 0.103 3.17 0.5 5760 -- --
65.9 0.378 2.79 -0.0805 0.0364 -0.427 -- 1.1 0.0996 2.81 0.3983 5760 -- --
67.09 0.381 2.78 -0.15 0.0267 -0.365 -- -- 0.0857 2.72 0.4344 5760 -- --
65.98 0.378 2.79 -0.0791 -- -0.423 -- 1.08 0.0997 -- 0.379 5760 -- --
69.08 0.39 2.79 -0.102 0.0221 -- -0.163 -- 0.0425 3.36 -- -- -- --
69.16 0.389 2.79 -0.099 0.0212 -- -- -- 0.0435 2.98 -- -- -- --
67.13 0.382 2.78 -0.15 -- -0.365 -- -- 0.0866 -- 0.4332 5760 -- --
67.66 0.383 2.78 -- 0.025 -0.321 -- -- 0.0987 2.64 0.4518 5910 -- --
69.19 0.389 2.79 -0.0981 -- -- -- -- 0.0441 -- -- -- -- --
69.42 0.39 2.79 -- 0.0192 -- -- -- 0.0545 2.95 -- -- -- --
67.69 0.383 2.78 -- -- -0.321 -- -- 0.0989 -- 0.4533 5890 -- --
69.44 0.389 2.79 -- -- -- -- -- 0.0549 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.93 humidity 80.0 30 < th dose independent rect. 1 1
11 57.93 humidity 80.0 30 < th dose dependent rect. 1 1
36 61.10 atmosphere 1005.0 90 > th dose dependent rect. 1 1
39 61.86 atmosphere 1005.0 10 > th dose dependent rect. 1 2
48 63.07 atmosphere 1005.0 30 > th dose independent rect. 1 2
57 63.45 temperature 25.0 30 < th dose dependent rect. 2 1
64 63.88 temperature 20.0 90 < th dose independent rect. 24 1
81 64.09 wind 3.0 10 < th dose independent rect. 1 2
98 64.67 wind 1.0 10 > th dose independent rect. 2 1
110 65.17 wind 9.0 10 < th dose independent rect. 21 23
111 65.19 radiation 1.0 4320 < th dose dependent rect. 21 1
114 65.20 atmosphere 995.0 30 > th dose independent rect. 21 23
116 65.21 temperature 10.0 1440 > th dose independent rect. 21 1
119 65.21 temperature 30.0 1440 < th dose independent rect. 21 1
123 65.21 humidity 50.0 1440 > th dose independent rect. 21 1
129 65.21 atmosphere 995.0 1440 > th dose independent rect. 21 1
130 65.21 radiation 1.0 1440 < th dose independent rect. 21 1
151 65.21 temperature 10.0 1440 > th dose independent rect. 22 23
170 65.22 atmosphere 1005.0 30 > th dose dependent rect. 20 1
171 65.23 wind 3.0 30 > th dose independent rect. 20 1
172 65.23 temperature 25.0 30 > th dose independent rect. 20 1
173 65.23 humidity 80.0 30 > th dose independent rect. 20 1
174 65.23 humidity 90.0 30 < th dose independent rect. 20 1
175 65.23 atmosphere 1005.0 30 > th dose independent rect. 20 1
176 65.23 temperature 20.0 30 > th dose dependent rect. 20 1
179 65.24 wind 5.0 30 < th dose independent rect. 20 1
182 65.24 wind 1.0 30 > th dose dependent rect. 20 1
183 65.24 temperature 10.0 30 > th dose dependent rect. 20 1
189 65.25 temperature 10.0 30 > th dose independent rect. 20 1
191 65.25 temperature 30.0 30 < th dose independent rect. 20 1
192 65.25 humidity 50.0 30 > th dose independent rect. 20 1
195 65.25 atmosphere 995.0 30 > th dose independent rect. 20 1
197 65.25 atmosphere 1010.0 30 < th dose independent rect. 20 1
199 65.25 radiation 1.0 30 < th dose independent rect. 20 1
204 65.25 precipitation 0.1 30 < th dose independent rect. 20 1
205 65.25 temperature 10.0 30 > th dose independent rect. 21 23
206 65.25 wind 7.0 30 < th dose dependent rect. 20 1
208 65.25 humidity 50.0 30 > th dose dependent rect. 20 1
211 65.25 radiation 1.0 30 < th dose dependent rect. 20 1
216 65.25 precipitation 0.1 30 < th dose dependent rect. 20 1
217 65.25 wind 7.0 10 < th dose dependent rect. 1 2
219 65.26 humidity 90.0 30 < th dose dependent rect. 20 1
222 65.27 atmosphere 1015.0 30 < th dose dependent rect. 20 1
234 65.30 wind 1.0 90 > th dose independent rect. 1 2
235 65.30 temperature 30.0 30 < th dose dependent rect. 20 1
237 65.31 precipitation 0.1 30 < th dose independent rect. 21 23
242 65.31 precipitation 0.1 30 < th dose dependent rect. 21 23
248 65.34 atmosphere 995.0 30 > th dose independent rect. 3 22
251 65.35 precipitation 0.1 30 < th dose independent rect. 1 2
254 65.35 precipitation 0.1 30 < th dose dependent rect. 1 2
284 65.37 wind 9.0 30 < th dose independent rect. 3 22
289 65.39 temperature 10.0 30 > th dose independent rect. 1 2
292 65.39 humidity 50.0 30 > th dose independent rect. 1 2
296 65.39 atmosphere 1010.0 30 < th dose independent rect. 1 2
298 65.39 radiation 1.0 30 < th dose independent rect. 1 2
303 65.39 temperature 10.0 30 > th dose independent rect. 3 22
304 65.39 radiation 1.0 30 < th dose dependent rect. 1 2
310 65.40 precipitation 0.1 30 < th dose independent rect. 3 22
314 65.40 precipitation 0.1 30 < th dose dependent rect. 3 22
356 65.51 radiation 1.0 43200 < th dose dependent rect. 2 2
357 65.52 wind 9.0 1440 < th dose independent rect. 2 2
358 65.52 temperature 10.0 1440 > th dose independent rect. 2 2
361 65.52 temperature 30.0 1440 < th dose independent rect. 2 2
365 65.52 humidity 50.0 1440 > th dose independent rect. 2 2
374 65.52 atmosphere 995.0 1440 > th dose independent rect. 2 2
375 65.52 radiation 1.0 1440 < th dose independent rect. 2 2
396 65.52 temperature 10.0 1440 > th dose independent rect. 4 22
401 65.52 radiation 1.0 1440 < th dose dependent rect. 2 2
540 65.87 atmosphere 1015.0 10 < th dose dependent rect. 2 1
545 65.90 humidity 50.0 30 > th dose independent rect. 3 22
567 66.06 temperature 10.0 30 > th dose dependent rect. 1 2
574 66.12 humidity 50.0 10 > th dose dependent rect. 2 1
615 66.17 wind 1.0 10 > th dose independent rect. 21 23
617 66.17 humidity 50.0 90 > th dose dependent rect. 21 12
641 66.21 atmosphere 1015.0 30 < th dose independent rect. 3 22
661 66.25 wind 1.0 30 > th dose independent rect. 3 22
675 66.30 humidity 50.0 30 > th dose independent rect. 21 23
687 66.33 humidity 60.0 720 > th dose independent rect. 2 7
697 66.36 precipitation 0.1 4320 < th dose independent rect. 8 1
698 66.36 atmosphere 995.0 14400 > th dose independent rect. 5 3
700 66.36 precipitation 0.1 4320 < th dose dependent rect. 8 1
704 66.37 precipitation 0.1 4320 > th dose independent rect. 8 1
705 66.37 precipitation 0.1 4320 > th dose dependent rect. 8 1
712 66.39 precipitation 0.1 1440 < th dose independent rect. 21 1
716 66.39 precipitation 0.1 1440 < th dose dependent rect. 21 1
719 66.41 precipitation 0.1 4320 > th dose independent rect. 11 1
721 66.41 precipitation 0.1 4320 > th dose independent rect. 7 6
722 66.41 precipitation 0.1 4320 > th dose dependent rect. 11 1
723 66.41 precipitation 0.1 4320 > th dose dependent rect. 7 6
726 66.42 wind 9.0 90 < th dose independent rect. 3 16
731 66.43 atmosphere 1005.0 30 > th dose independent rect. 20 7
732 66.43 wind 7.0 90 < th dose independent rect. 19 8
733 66.43 atmosphere 995.0 90 > th dose independent rect. 3 16
737 66.44 precipitation 0.1 4320 < th dose independent rect. 11 1
740 66.44 wind 1.0 4320 < th dose dependent rect. 19 1
741 66.44 precipitation 0.1 4320 < th dose dependent rect. 11 1
747 66.45 atmosphere 995.0 14400 > th dose independent rect. 1 1
748 66.45 atmosphere 995.0 14400 > th dose independent rect. 5 1
753 66.45 precipitation 0.1 4320 < th dose independent rect. 7 5
754 66.45 wind 7.0 720 < th dose independent rect. 2 7
762 66.45 precipitation 0.1 4320 < th dose dependent rect. 7 5
764 66.46 precipitation 0.1 4320 > th dose independent rect. 21 1
773 66.46 precipitation 0.1 4320 > th dose dependent rect. 21 1
817 66.47 precipitation 0.1 4320 > th dose independent rect. 21 3
820 66.47 temperature 10.0 720 > th dose independent rect. 2 7
822 66.47 atmosphere 995.0 720 > th dose independent rect. 2 7
824 66.47 temperature 10.0 720 > th dose independent rect. 9 17
846 66.47 precipitation 0.1 4320 > th dose dependent rect. 21 3
847 66.47 radiation 20.0 10 < th dose dependent rect. 3 22
853 66.48 atmosphere 995.0 14400 > th dose independent rect. 4 8
854 66.48 precipitation 0.1 720 < th dose independent rect. 9 17
861 66.48 precipitation 0.1 720 < th dose dependent rect. 9 17
862 66.49 atmosphere 995.0 14400 > th dose independent rect. 23 1
876 66.50 temperature 10.0 720 > th dose independent rect. 14 7
878 66.50 atmosphere 995.0 14400 > th dose independent rect. 1 9
879 66.50 temperature 10.0 720 > th dose independent rect. 21 17
880 66.50 atmosphere 995.0 720 > th dose independent rect. 21 17
892 66.51 atmosphere 995.0 14400 > th dose independent rect. 1 7
893 66.51 precipitation 0.1 720 < th dose independent rect. 14 7
895 66.51 atmosphere 995.0 14400 > th dose independent rect. 22 12
901 66.51 precipitation 0.1 720 < th dose dependent rect. 14 7
902 66.52 temperature 20.0 1440 > th dose independent rect. 9 1
915 66.52 precipitation 0.1 4320 < th dose independent rect. 21 3
916 66.52 temperature 10.0 90 > th dose independent rect. 19 8
917 66.52 temperature 30.0 90 < th dose independent rect. 19 8
918 66.52 humidity 50.0 90 > th dose independent rect. 19 8
921 66.52 atmosphere 995.0 90 > th dose independent rect. 19 8
922 66.52 radiation 1.0 90 < th dose independent rect. 19 8
927 66.52 atmosphere 995.0 14400 > th dose independent rect. 23 9
932 66.52 temperature 10.0 90 > th dose independent rect. 3 16
933 66.52 atmosphere 1015.0 90 < th dose independent rect. 3 16
944 66.52 precipitation 0.1 4320 < th dose dependent rect. 21 3
946 66.52 radiation 1.0 90 < th dose dependent rect. 19 8
959 66.53 precipitation 0.1 90 < th dose independent rect. 19 8
968 66.53 precipitation 0.1 90 < th dose dependent rect. 19 8
969 66.54 wind 1.0 4320 < th dose independent rect. 19 1
973 66.54 atmosphere 995.0 14400 > th dose independent rect. 22 4
981 66.54 atmosphere 995.0 14400 > th dose independent rect. 19 13
987 66.54 precipitation 0.1 90 < th dose independent rect. 3 16
995 66.54 precipitation 0.1 90 < th dose dependent rect. 3 16
997 66.55 atmosphere 995.0 14400 < th dose independent rect. 1 1