Os06g0555900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0555900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.49 | 0.716 | 2.85 | 0.382 | 0.00356 | 3.74 | 1.14 | -16.4 | -0.237 | 1.89 | 0.2045 | 277 | -- | -- |
| 240.83 | 0.728 | 2.92 | 0.285 | 0.0811 | -0.871 | 1.14 | -- | -0.222 | 0.931 | 0.2045 | 277 | -- | -- |
| 236.98 | 0.717 | 2.85 | 0.404 | 0.0427 | 3.72 | -- | -16.8 | -0.238 | 19.4 | 0.3128 | 276 | -- | -- |
| 242.67 | 0.726 | 2.93 | 0.0939 | 0.145 | -1.22 | -- | -- | -0.226 | 22 | 6.455e-05 | 266 | -- | -- |
| 237.49 | 0.718 | 2.86 | 0.338 | -- | 3.57 | -- | -16.3 | -0.241 | -- | 1.126e-06 | 276 | -- | -- |
| 241.81 | 0.729 | 2.92 | 0.301 | 0.0991 | -- | 1.15 | -- | -0.225 | 0.718 | -- | -- | -- | -- |
| 245.27 | 0.733 | 2.93 | 0.263 | 0.224 | -- | -- | -- | -0.227 | 20.3 | -- | -- | -- | -- |
| 244.02 | 0.728 | 2.92 | 0.189 | -- | -1.18 | -- | -- | -0.215 | -- | 8.441e-05 | 262 | -- | -- |
| 242.85 | 0.726 | 2.93 | -- | 0.195 | -1.18 | -- | -- | -0.232 | 20.2 | 0.3716 | 262 | -- | -- |
| 248.06 | 0.736 | 2.93 | 0.261 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 247.09 | 0.735 | 2.94 | -- | 0.223 | -- | -- | -- | -0.256 | 20.4 | -- | -- | -- | -- |
| 244.93 | 0.729 | 2.93 | -- | -- | -1.26 | -- | -- | -0.232 | -- | 0.4563 | 262 | -- | -- |
| 249.86 | 0.738 | 2.93 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.83 | wind | 7.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 2 | 218.90 | wind | 7.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 3 | 219.34 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 1 |
| 4 | 219.34 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 67 | 224.54 | wind | 7.0 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 107 | 225.91 | humidity | 60.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 110 | 226.23 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 20 | 12 |
| 126 | 226.53 | precipitation | 0.1 | 270 | < th | dose independent | sin | 14 | NA |
| 127 | 226.53 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 14 | NA |
| 133 | 226.62 | wind | 7.0 | 90 | > th | dose independent | rect. | 20 | 8 |
| 180 | 227.72 | wind | 3.0 | 90 | < th | dose independent | rect. | 12 | 2 |
| 181 | 227.75 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 11 |
| 185 | 227.76 | wind | 3.0 | 10 | < th | dose independent | rect. | 12 | 3 |
| 186 | 227.76 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 198 | 227.88 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 22 |
| 200 | 227.95 | wind | 3.0 | 10 | < th | dose independent | rect. | 12 | 7 |
| 205 | 227.99 | wind | 5.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 211 | 228.03 | precipitation | 0.1 | 270 | > th | dose independent | sin | 13 | NA |
| 229 | 228.18 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 7 | NA |
| 236 | 228.23 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 242 | 228.31 | wind | 5.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 251 | 228.43 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 277 | 228.78 | wind | 5.0 | 10 | < th | dose dependent | rect. | 13 | 6 |
| 297 | 229.01 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 302 | 229.07 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 22 | 2 |
| 304 | 229.07 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 22 | 2 |
| 351 | 229.49 | wind | 1.0 | 90 | > th | dose dependent | sin | 11 | NA |
| 369 | 229.60 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 5 | NA |
| 371 | 229.62 | wind | 1.0 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 378 | 229.69 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 386 | 229.69 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 393 | 229.69 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 400 | 229.74 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 9 |
| 408 | 229.78 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 416 | 229.83 | atmosphere | 995.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 457 | 229.83 | atmosphere | 995.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 498 | 229.87 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 12 | 4 |
| 509 | 229.95 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 1 |
| 518 | 229.96 | wind | 7.0 | 30 | > th | dose dependent | rect. | 17 | 5 |
| 522 | 229.97 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 1 |
| 536 | 230.01 | wind | 5.0 | 90 | > th | dose independent | rect. | 23 | 3 |
| 580 | 230.23 | wind | 7.0 | 30 | > th | dose independent | rect. | 17 | 5 |
| 590 | 230.26 | wind | 5.0 | 90 | > th | dose dependent | rect. | 23 | 2 |
| 596 | 230.32 | wind | 5.0 | 90 | > th | dose independent | rect. | 23 | 5 |
| 611 | 230.34 | wind | 1.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 613 | 230.36 | wind | 3.0 | 90 | > th | dose dependent | rect. | 23 | 5 |
| 625 | 230.43 | wind | 5.0 | 90 | > th | dose dependent | sin | 11 | NA |
| 644 | 230.60 | wind | 7.0 | 90 | > th | dose independent | sin | 11 | NA |
| 654 | 230.63 | wind | 1.0 | 90 | > th | dose dependent | rect. | 20 | 11 |
| 690 | 230.80 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 697 | 230.86 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 12 | NA |
| 698 | 230.86 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 710 | 230.95 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 2 |
| 724 | 231.04 | atmosphere | 995.0 | 720 | < th | dose independent | sin | 6 | NA |
| 795 | 231.29 | wind | 9.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 796 | 231.30 | wind | 7.0 | 90 | < th | dose independent | sin | 11 | NA |
| 797 | 231.30 | radiation | 40.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 799 | 231.31 | wind | 3.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 817 | 231.35 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 20 | NA |
| 865 | 231.46 | wind | 5.0 | 90 | < th | dose independent | rect. | 12 | 6 |
| 907 | 231.64 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 918 | 231.67 | precipitation | 0.1 | 270 | < th | dose independent | sin | 10 | NA |
| 919 | 231.67 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 10 | NA |
| 930 | 231.70 | wind | 3.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 941 | 231.74 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 20 |
| 968 | 231.79 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 984 | 231.85 | atmosphere | 995.0 | 720 | < th | dose dependent | sin | 7 | NA |