Os06g0554800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter).
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Os06g0554800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.23 | 0.382 | 11.9 | -0.87 | 1.29 | 0.354 | 1.1 | 4.55 | -0.418 | 8.05 | 27.26 | 3652 | -- | -- |
| 68.68 | 0.386 | 12 | -1.76 | 1.31 | 0.858 | 1.04 | -- | -0.514 | 8.01 | 28.33 | 3669 | -- | -- |
| 69.73 | 0.389 | 11.9 | -0.892 | 1.29 | 0.379 | -- | 4.3 | -0.43 | 7.91 | 27.25 | 3578 | -- | -- |
| 71.73 | 0.394 | 12 | -1.72 | 1.3 | 0.817 | -- | -- | -0.534 | 7.97 | 27.9 | 3918 | -- | -- |
| 155.48 | 0.581 | 11.9 | -0.408 | -- | 0.0783 | -- | 5.22 | -0.334 | -- | 26.85 | 2923 | -- | -- |
| 91.13 | 0.448 | 12 | -1.53 | 1.27 | -- | 0.958 | -- | -0.589 | 7.8 | -- | -- | -- | -- |
| 93.71 | 0.453 | 12 | -1.5 | 1.28 | -- | -- | -- | -0.591 | 7.7 | -- | -- | -- | -- |
| 151.65 | 0.574 | 12.1 | -1.67 | -- | 0.708 | -- | -- | -0.59 | -- | 34.29 | 7108 | -- | -- |
| 144.79 | 0.56 | 12 | -- | 1.28 | 0.509 | -- | -- | -0.31 | 7.9 | 30.3 | 4280 | -- | -- |
| 181.38 | 0.629 | 12.1 | -1.49 | -- | -- | -- | -- | -0.572 | -- | -- | -- | -- | -- |
| 153.34 | 0.579 | 12 | -- | 1.26 | -- | -- | -- | -0.423 | 7.78 | -- | -- | -- | -- |
| 223.57 | 0.696 | 12 | -- | -- | 0.482 | -- | -- | -0.428 | -- | 34 | 7127 | -- | -- |
| 239.75 | 0.723 | 12 | -- | -- | -- | -- | -- | -0.407 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.73 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 2 | 65.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 65.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 4 | 65.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 7 | 65.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 8 | 65.99 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 10 | 66.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 12 | 66.02 | temperature | 30 | 14400 | > th | dose independent | sin | 10 | NA |
| 16 | 66.07 | temperature | 30 | 14400 | < th | dose independent | sin | 10 | NA |
| 18 | 66.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 19 | 66.07 | temperature | 30 | 14400 | > th | dose dependent | sin | 10 | NA |
| 31 | 66.15 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 55 | 66.30 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 64 | 66.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 68 | 66.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 80 | 66.36 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 99 | 66.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 102 | 66.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 125 | 66.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 137 | 66.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 150 | 66.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 159 | 66.45 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 162 | 66.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 164 | 66.46 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 166 | 66.46 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 285 | 66.50 | temperature | 30 | 14400 | > th | dose dependent | sin | 18 | NA |
| 330 | 66.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 397 | 66.57 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 476 | 66.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 501 | 66.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 503 | 66.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 529 | 66.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 583 | 66.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 623 | 66.71 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 668 | 66.74 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 670 | 66.74 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 814 | 66.79 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 815 | 66.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 887 | 66.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 899 | 66.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 923 | 66.80 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 962 | 66.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 997 | 66.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 1 |