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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0554200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.87 (0.044) R2 : 0.948
β1 : 1.36 (0.161) R2dD : 0.00849 R2D : 0.00753
β2 : 8.93 (0.106) R2dC : 0.796 R2C : 0.807
β3 : 5.41 (0.161) R2dE : 0.129 R2E : 0.145
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0448 (0.0938) R2dN8 : 6.25e-05 R2N8 : -0.00405
σ : 0.822
deviance : 311.12
__
_____
C
peak time of C : 10
E
wheather : radiation
threshold : 0.18
memory length : 42
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.69
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.87 0.82 8.89 1.2 8.82 5.38 1.28 -2.03 -0.0693 10.1 0.1702 40 7.47 --
305.88 0.815 8.88 1.29 8.86 5.38 1.26 -- -0.083 10.1 0.18 41 7.62 --
309.57 0.819 8.89 1.27 8.88 5.41 -- -1.52 -0.0824 10.1 0.18 41 7.59 --
311.12 0.822 8.87 1.36 8.93 5.41 -- -- -0.0448 10 0.18 42 7.69 --
2582.8 2.37 9.01 1.76 -- 7.8 -- -2.23 0.36 -- 0.001331 64 0.102 --
970.97 1.46 8.87 1.74 9.01 -- 0.93 -- 0.0451 10.7 -- -- -- --
974.55 1.46 8.87 1.78 9 -- -- -- 0.0479 10.7 -- -- -- --
2415.09 2.29 9.09 1.6 -- 8.02 -- -- -0.151 -- 0.0001879 144 2.63e-06 --
359.95 0.884 8.9 -- 8.9 5.52 -- -- -0.194 10.1 0.18 42 7.65 --
5970.28 3.61 9.1 1.61 -- -- -- -- 0.000936 -- -- -- -- --
1057.92 1.52 8.91 -- 8.99 -- -- -- -0.15 10.6 -- -- -- --
1057.92 1.51 9.13 -- -- 8.95 -- -- -0.149 -- -11.5 592 0.29 --
6038.4 3.63 9.14 -- -- -- -- -- -0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 341.60 radiation 1.0 30 < th dose dependent sin 14 NA
4 386.86 precipitation 0.1 90 < th dose independent rect. 4 14
5 386.86 precipitation 0.1 90 < th dose dependent rect. 4 14
8 400.42 radiation 10.0 90 < th dose dependent rect. 18 10
11 401.27 radiation 1.0 30 > th dose independent sin 13 NA
14 401.42 radiation 10.0 90 < th dose independent rect. 18 10
15 401.80 temperature 10.0 90 > th dose independent rect. 18 10
16 401.80 humidity 50.0 90 > th dose independent rect. 18 10
20 401.80 temperature 10.0 90 > th dose independent rect. 4 14
21 401.80 atmosphere 1015.0 90 < th dose independent rect. 4 14
22 402.47 atmosphere 995.0 90 > th dose independent rect. 18 10
25 403.08 wind 9.0 90 < th dose independent rect. 18 10
26 403.22 radiation 1.0 90 > th dose independent rect. 14 16
27 404.50 radiation 1.0 90 < th dose independent sin 14 NA
28 405.26 precipitation 0.1 90 < th dose independent rect. 18 10
29 405.26 precipitation 0.1 90 < th dose dependent rect. 18 10
35 415.75 wind 9.0 90 < th dose independent rect. 4 14
46 439.06 temperature 10.0 90 > th dose dependent rect. 18 10
47 441.19 radiation 40.0 90 < th dose independent rect. 13 5
48 444.49 precipitation 0.1 90 < th dose independent rect. 14 4
49 444.49 precipitation 0.1 90 < th dose dependent rect. 14 4
64 451.23 atmosphere 995.0 90 > th dose independent rect. 4 14
78 455.57 temperature 30.0 90 < th dose independent rect. 18 10
82 458.33 wind 1.0 90 > th dose independent rect. 14 4
83 458.46 wind 9.0 90 < th dose independent rect. 18 20
86 459.04 temperature 10.0 90 > th dose independent rect. 14 4
88 459.04 atmosphere 1010.0 90 < th dose independent rect. 14 4
90 459.04 temperature 10.0 90 > th dose independent rect. 18 20
92 459.47 atmosphere 995.0 90 > th dose independent rect. 18 20
94 460.25 precipitation 0.1 90 < th dose independent rect. 18 20
95 460.25 precipitation 0.1 90 < th dose dependent rect. 18 20
97 460.90 temperature 10.0 1440 > th dose independent rect. 15 4
101 460.90 temperature 10.0 1440 > th dose independent rect. 19 20
105 461.81 wind 9.0 90 < th dose independent rect. 14 4
120 467.53 radiation 20.0 270 < th dose independent rect. 16 10
130 469.91 temperature 10.0 270 > th dose independent rect. 16 21
131 470.11 wind 9.0 270 < th dose independent rect. 16 21
139 471.58 temperature 10.0 270 > th dose independent rect. 16 10
143 471.69 radiation 1.0 270 > th dose independent rect. 13 3
144 471.89 wind 9.0 270 < th dose independent rect. 16 10
148 473.87 radiation 1.0 270 > th dose independent rect. 14 1
149 474.92 temperature 10.0 270 > th dose independent rect. 14 1
151 474.92 atmosphere 1010.0 270 < th dose independent rect. 14 1
153 474.92 temperature 10.0 270 > th dose independent rect. 15 23
154 475.19 radiation 40.0 270 < th dose dependent rect. 16 10
155 475.67 wind 9.0 270 < th dose independent rect. 14 1
156 475.90 precipitation 0.1 270 < th dose independent rect. 14 1
157 475.90 precipitation 0.1 270 < th dose dependent rect. 14 1
159 476.60 atmosphere 995.0 270 > th dose independent rect. 13 3
162 477.02 wind 1.0 270 > th dose independent rect. 14 1
163 477.57 temperature 10.0 90 > th dose dependent rect. 14 4
172 481.12 precipitation 0.1 270 < th dose independent rect. 16 21
173 481.12 precipitation 0.1 270 < th dose dependent rect. 16 21
178 481.73 temperature 10.0 1440 > th dose independent rect. 19 10
181 481.73 temperature 30.0 1440 < th dose independent rect. 19 10
185 481.73 humidity 50.0 1440 > th dose independent rect. 19 10
187 481.73 atmosphere 995.0 1440 > th dose independent rect. 19 10
188 481.73 radiation 20.0 1440 < th dose independent rect. 19 10
200 481.73 temperature 10.0 1440 > th dose independent rect. 5 14
216 486.13 precipitation 0.1 270 < th dose independent rect. 16 10
217 486.13 precipitation 0.1 270 < th dose dependent rect. 16 10
219 486.83 atmosphere 995.0 270 > th dose independent rect. 14 1
245 490.25 atmosphere 995.0 270 > th dose independent rect. 2 14
249 491.09 atmosphere 1015.0 90 < th dose independent rect. 18 10
277 498.07 radiation 1.0 90 < th dose dependent rect. 7 21
279 498.54 humidity 90.0 90 < th dose independent rect. 14 4
284 499.77 radiation 1.0 90 < th dose dependent rect. 11 17
290 500.44 atmosphere 995.0 90 > th dose dependent rect. 14 4
308 503.26 temperature 10.0 270 > th dose dependent rect. 14 1
314 503.88 atmosphere 1015.0 90 < th dose independent rect. 18 20
335 505.87 atmosphere 995.0 270 > th dose independent rect. 16 21
338 506.07 wind 9.0 270 < th dose independent rect. 6 6
340 506.38 temperature 15.0 270 > th dose independent rect. 6 6
347 506.88 precipitation 0.1 270 < th dose independent rect. 6 6
348 506.88 precipitation 0.1 270 < th dose dependent rect. 6 6
354 507.34 atmosphere 995.0 270 > th dose independent rect. 6 6
355 507.34 atmosphere 1015.0 270 < th dose independent rect. 6 6
356 507.34 temperature 10.0 270 > th dose independent rect. 12 18
359 508.21 humidity 50.0 90 > th dose independent rect. 18 19
362 508.57 humidity 50.0 270 > th dose independent rect. 14 1
370 509.64 wind 9.0 270 < th dose independent rect. 12 18
420 513.68 precipitation 0.1 270 < th dose independent rect. 12 18
421 513.68 precipitation 0.1 270 < th dose dependent rect. 12 18
429 513.69 atmosphere 995.0 1440 > th dose independent rect. 19 19
435 514.97 radiation 1.0 270 > th dose independent rect. 12 5
450 517.07 humidity 50.0 270 > th dose independent rect. 6 6
451 517.27 radiation 1.0 90 < th dose independent rect. 8 20
453 517.39 radiation 1.0 90 < th dose independent rect. 11 17
483 520.54 wind 9.0 270 < th dose dependent rect. 14 1
484 520.82 wind 1.0 90 > th dose independent rect. 18 9
489 521.95 radiation 1.0 10 < th dose dependent rect. 18 14
494 522.13 humidity 50.0 270 > th dose independent rect. 16 21
505 523.85 atmosphere 995.0 270 > th dose dependent rect. 14 1
522 525.42 radiation 1.0 270 > th dose independent rect. 17 20
528 525.78 atmosphere 995.0 270 > th dose independent rect. 12 18
530 526.35 radiation 40.0 90 < th dose independent rect. 14 17
531 526.44 radiation 40.0 30 < th dose dependent rect. 14 4
536 527.27 radiation 1.0 270 > th dose independent rect. 6 6
550 528.61 wind 7.0 270 < th dose independent rect. 21 10
553 528.87 radiation 20.0 10 < th dose dependent rect. 5 13
579 530.08 wind 9.0 90 < th dose dependent rect. 14 4
586 530.62 wind 1.0 90 > th dose independent rect. 18 20
591 530.85 radiation 20.0 270 < th dose independent rect. 21 10
597 531.45 humidity 70.0 270 > th dose independent rect. 21 10
618 533.08 temperature 10.0 90 > th dose dependent rect. 18 19
626 533.64 temperature 10.0 270 > th dose independent rect. 21 10
627 533.64 temperature 30.0 270 < th dose independent rect. 21 10
628 533.64 humidity 50.0 270 > th dose independent rect. 21 10
630 533.64 atmosphere 995.0 270 > th dose independent rect. 21 10
632 533.64 temperature 10.0 270 > th dose independent rect. 7 14
636 533.94 temperature 10.0 90 > th dose dependent rect. 4 14
700 538.26 precipitation 0.1 270 < th dose independent rect. 21 10
701 538.26 precipitation 0.1 270 < th dose dependent rect. 21 10
702 538.29 radiation 20.0 30 < th dose independent rect. 4 14
724 539.62 wind 9.0 270 < th dose independent rect. 7 14
752 541.39 radiation 40.0 270 < th dose dependent rect. 21 10
755 541.54 atmosphere 1015.0 270 < th dose independent rect. 7 14
767 542.31 precipitation 0.1 270 < th dose independent rect. 7 14
768 542.31 precipitation 0.1 270 < th dose dependent rect. 7 14
774 542.73 radiation 40.0 14400 < th dose dependent rect. 19 9
804 545.02 wind 1.0 270 > th dose independent rect. 6 6
810 545.14 radiation 40.0 90 < th dose independent rect. 4 14
837 546.37 radiation 1.0 1440 < th dose independent rect. 19 9
861 546.38 radiation 40.0 1440 < th dose dependent rect. 19 9
863 546.40 temperature 15.0 270 > th dose independent rect. 7 4
899 548.55 wind 9.0 270 < th dose independent rect. 7 4
914 549.06 precipitation 0.1 270 < th dose independent rect. 7 4
915 549.06 precipitation 0.1 270 < th dose dependent rect. 7 4
924 549.38 atmosphere 995.0 270 > th dose independent rect. 7 4
925 549.38 atmosphere 1015.0 270 < th dose independent rect. 7 4
926 549.38 temperature 10.0 270 > th dose independent rect. 11 20
952 551.19 humidity 50.0 270 > th dose independent rect. 7 4
995 553.86 wind 9.0 270 < th dose independent rect. 11 20