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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0553200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (--) R2 : 0.00691
β1 : 0.219 (--) R2dD : -0.0061 R2D : -0.0109
β2 : 0.247 (--) R2dC : 0.0201 R2C : 0.016
β3 : 17.4 (--) R2dE : -- R2E : --
β4 : 0.126 (--) R2dD*C : -0.000872 R2D*C : -0.00477
β5 : 37.1 (--) R2dD*E : -- R2D*E : --
γ1 : 0.0465 (--) R2dN8 : -0.00155 R2N8 : -0.00613
σ : 0.677
deviance : 207.62
__
_____
C
peak time of C : 10.5
E
wheather : radiation
threshold : 1
memory length : 3
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8
open length of G : 3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.62 0.677 3.04 0.219 0.247 17.4 0.126 37.1 0.0465 10.5 1 3 8 3
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
234.63 0.718 2.99 -0.0122 0.291 -- -0.0808 -- 0.0217 10.5 -- -- -- --
234.65 0.717 2.99 -0.0155 0.291 -- -- -- 0.0214 10.5 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
239.85 0.724 2.99 -0.0205 -- -- -- -- 0.0203 -- -- -- -- --
234.66 0.717 2.99 -- 0.291 -- -- -- 0.0231 10.5 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
239.86 0.723 2.99 -- -- -- -- -- 0.0225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.62 radiation 1.0 90 < th dose independent rect. 8 3
2 207.62 radiation 1.0 90 < th dose dependent rect. 8 3
11 212.56 wind 3.0 30 > th dose independent rect. 9 1
17 215.94 radiation 30.0 90 < th dose independent rect. 9 1
18 216.22 wind 1.0 30 > th dose dependent rect. 9 1
30 218.22 radiation 10.0 10 > th dose independent rect. 9 1
36 218.83 temperature 30.0 10 < th dose independent rect. 10 23
39 219.16 humidity 70.0 10 > th dose independent rect. 9 2
49 219.68 radiation 40.0 90 < th dose dependent rect. 8 2
62 220.84 humidity 80.0 10 < th dose independent rect. 9 1
66 220.99 temperature 25.0 90 < th dose independent rect. 8 1
73 221.67 temperature 15.0 10 > th dose dependent rect. 9 1
74 221.67 humidity 50.0 30 > th dose dependent rect. 9 1
75 221.68 temperature 20.0 30 > th dose independent rect. 9 1
82 221.83 temperature 20.0 90 < th dose independent rect. 6 6
84 221.85 wind 1.0 90 > th dose dependent rect. 6 1
91 221.99 temperature 20.0 90 < th dose independent rect. 6 10
97 222.07 temperature 20.0 90 < th dose independent rect. 6 2
104 222.23 temperature 20.0 90 < th dose dependent rect. 6 1
120 222.39 temperature 20.0 10 < th dose independent rect. 8 7
126 222.47 temperature 20.0 90 < th dose dependent rect. 6 5
131 222.52 wind 7.0 90 > th dose dependent rect. 8 1
133 222.58 temperature 20.0 90 < th dose dependent rect. 6 12
139 222.62 humidity 80.0 90 < th dose dependent rect. 6 1
140 222.63 temperature 20.0 90 < th dose dependent rect. 6 8
148 222.68 temperature 25.0 10 < th dose dependent rect. 7 1
150 222.73 temperature 20.0 10 < th dose independent rect. 8 10
155 222.76 wind 7.0 90 > th dose independent rect. 8 1
181 223.03 temperature 20.0 10 < th dose dependent rect. 7 8
186 223.05 humidity 90.0 90 > th dose independent rect. 8 2
213 223.13 humidity 80.0 90 < th dose independent rect. 6 1
220 223.14 temperature 20.0 10 < th dose dependent rect. 7 5
245 223.24 wind 3.0 90 > th dose independent rect. 6 1
254 223.25 atmosphere 1000.0 30 > th dose independent rect. 10 23
272 223.28 precipitation 0.1 10 < th dose independent rect. 10 23
275 223.28 precipitation 0.1 10 < th dose dependent rect. 10 23
284 223.35 wind 9.0 30 < th dose independent rect. 9 1
285 223.35 temperature 10.0 30 > th dose independent rect. 9 1
289 223.35 atmosphere 995.0 30 > th dose independent rect. 9 1
290 223.35 atmosphere 1015.0 30 < th dose independent rect. 9 1
292 223.35 precipitation 0.1 30 < th dose independent rect. 9 1
293 223.35 temperature 10.0 30 > th dose independent rect. 10 23
294 223.35 precipitation 0.1 30 < th dose dependent rect. 9 1
298 223.36 temperature 10.0 1440 > th dose independent rect. 10 1
303 223.36 atmosphere 995.0 1440 > th dose independent rect. 10 1
312 223.36 temperature 10.0 1440 > th dose independent rect. 11 23
331 223.56 humidity 90.0 90 > th dose dependent rect. 8 2
357 223.76 wind 9.0 90 > th dose dependent rect. 22 12
369 223.84 radiation 40.0 90 > th dose independent rect. 12 1
381 223.99 wind 9.0 30 < th dose independent rect. 10 23
384 224.07 atmosphere 995.0 10 > th dose dependent rect. 9 1
401 224.30 radiation 30.0 90 < th dose independent rect. 8 21
498 225.06 wind 5.0 10 > th dose dependent rect. 4 5
507 225.12 wind 5.0 10 > th dose dependent rect. 2 7
538 225.23 atmosphere 1015.0 30 < th dose dependent rect. 9 1
540 225.24 radiation 30.0 90 < th dose independent rect. 21 13
552 225.34 radiation 10.0 90 < th dose dependent rect. 6 1
555 225.37 humidity 70.0 90 > th dose independent rect. 21 13
574 225.49 temperature 10.0 720 > th dose dependent rect. 24 1
575 225.49 atmosphere 1005.0 90 > th dose dependent rect. 12 1
581 225.53 radiation 30.0 90 > th dose dependent rect. 12 1
587 225.57 humidity 70.0 10 > th dose independent rect. 22 13
588 225.57 humidity 70.0 90 > th dose independent rect. 8 21
603 225.69 wind 3.0 90 < th dose dependent rect. 8 1
604 225.70 humidity 50.0 1440 > th dose independent rect. 10 1
610 225.76 atmosphere 1015.0 1440 < th dose independent rect. 11 1
615 225.79 humidity 70.0 90 > th dose independent rect. 8 6
637 225.85 radiation 1.0 30 > th dose independent rect. 10 23
646 225.91 radiation 40.0 10 < th dose independent rect. 10 23
651 225.93 atmosphere 1015.0 1440 > th dose independent rect. 10 1
667 225.93 wind 1.0 30 > th dose independent rect. 10 23
668 225.93 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
692 225.98 atmosphere 1015.0 1440 < th dose independent rect. 6 6
693 225.98 atmosphere 1015.0 1440 < th dose independent rect. 4 8
715 226.08 radiation 20.0 90 > th dose independent rect. 12 1
721 226.14 wind 3.0 30 > th dose independent rect. 24 10
738 226.22 temperature 30.0 10 > th dose independent rect. 12 1
758 226.25 temperature 10.0 1440 > th dose independent rect. 13 1
762 226.25 atmosphere 995.0 1440 > th dose independent rect. 13 1
765 226.25 temperature 10.0 1440 > th dose independent rect. 14 23
775 226.27 atmosphere 1015.0 30 < th dose independent rect. 10 23
839 226.41 humidity 50.0 30 > th dose independent rect. 10 23
840 226.41 temperature 25.0 30 > th dose dependent rect. 12 1
845 226.42 radiation 40.0 90 < th dose dependent rect. 8 21
861 226.49 radiation 20.0 30 > th dose dependent rect. 12 3
881 226.52 temperature 10.0 10 > th dose dependent rect. 1 11
915 226.62 wind 3.0 30 < th dose independent rect. 24 12
922 226.63 humidity 60.0 30 > th dose independent rect. 12 1
936 226.67 atmosphere 1010.0 30 < th dose independent rect. 12 1
938 226.67 radiation 1.0 10 > th dose dependent rect. 9 1
942 226.69 wind 5.0 30 < th dose independent rect. 12 1