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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0551800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0475) R2 : 0.651
β1 : 1.11 (0.176) R2dD : 0.0327 R2D : -0.0462
β2 : 2.99 (0.118) R2dC : 0.54 R2C : 0.337
β3 : 1.9 (0.154) R2dE : 0.133 R2E : -0.124
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.57 (0.103) R2dN8 : 0.247 R2N8 : 0.11
σ : 0.885
deviance : 361.13
__
_____
C
peak time of C : 23
E
wheather : humidity
threshold : 73.24
memory length : 1222
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.46 0.88 4.36 1.09 2.9 1.82 1.74 0.675 1.54 22.9 72.23 1263 -- --
350.24 0.872 4.35 1.19 3 1.92 1.61 -- 1.58 22.9 73 1222 -- --
360.91 0.885 4.36 1.06 2.96 1.87 -- 0.388 1.55 23 73.27 1234 -- --
361.13 0.885 4.35 1.11 2.99 1.9 -- -- 1.57 23 73.24 1222 -- --
738.77 1.27 4.34 0.905 -- 1.23 -- 0.38 1.34 -- 73 1543 -- --
470.47 1.02 4.4 0.827 2.6 -- 1.42 -- 1.33 22.6 -- -- -- --
478.78 1.02 4.4 0.768 2.59 -- -- -- 1.32 22.7 -- -- -- --
739.61 1.27 4.34 0.916 -- 1.23 -- -- 1.35 -- 73.24 1222 -- --
393.03 0.923 4.37 -- 3.04 2.01 -- -- 1.49 23 74 1222 -- --
892.5 1.4 4.34 0.818 -- -- -- -- 1.34 -- -- -- -- --
494.33 1.04 4.42 -- 2.6 -- -- -- 1.24 22.7 -- -- -- --
744.32 1.27 4.36 -- -- 1.25 -- -- 1.25 -- 75 3026 -- --
910.15 1.41 4.36 -- -- -- -- -- 1.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 349.71 humidity 80 1440 < th dose independent rect. 6 9
13 353.29 humidity 80 1440 > th dose independent rect. 6 9
22 354.35 humidity 80 1440 < th dose independent sin 2 NA
37 356.15 humidity 80 1440 > th dose independent sin 2 NA
40 356.84 humidity 60 1440 > th dose dependent rect. 11 2
65 359.03 humidity 70 1440 > th dose independent rect. 18 20
93 361.73 humidity 60 720 > th dose dependent sin 16 NA
112 362.90 humidity 60 1440 > th dose dependent rect. 8 7
118 363.13 humidity 60 720 > th dose dependent rect. 15 10
125 363.26 humidity 60 1440 > th dose dependent rect. 5 11
127 363.30 humidity 60 1440 > th dose dependent sin 1 NA
156 363.70 humidity 70 1440 > th dose independent rect. 8 22
161 363.72 humidity 70 1440 > th dose independent rect. 8 19
182 363.86 humidity 70 1440 < th dose independent rect. 18 20
217 364.05 humidity 70 1440 > th dose independent rect. 23 22
245 364.08 humidity 70 1440 > th dose independent no NA NA
274 364.21 humidity 70 1440 < th dose independent rect. 18 22
282 364.39 humidity 90 1440 < th dose dependent rect. 2 13
312 364.76 humidity 70 1440 > th dose independent rect. 11 23
316 364.82 humidity 70 1440 < th dose independent rect. 9 11
338 365.01 humidity 80 1440 < th dose dependent rect. 18 20
341 365.04 humidity 60 720 > th dose dependent rect. 11 14
346 365.08 humidity 70 1440 < th dose independent rect. 15 23
398 365.49 humidity 90 1440 < th dose dependent sin 2 NA
432 365.70 humidity 60 1440 > th dose dependent rect. 3 17
453 365.82 humidity 70 1440 < th dose independent no NA NA
509 365.82 humidity 70 720 > th dose dependent rect. 9 16
514 365.88 humidity 90 1440 < th dose dependent rect. 18 22
555 366.21 humidity 70 1440 > th dose independent rect. 11 2
618 366.62 humidity 80 720 > th dose independent sin 19 NA
623 366.65 humidity 70 1440 < th dose independent rect. 11 23
690 367.07 humidity 90 1440 < th dose dependent rect. 2 19
709 367.19 humidity 70 1440 < th dose independent rect. 11 2
754 367.43 humidity 50 1440 > th dose dependent rect. 18 22
764 367.49 humidity 80 720 < th dose independent sin 18 NA
919 368.37 humidity 90 1440 < th dose dependent rect. 11 3
954 368.54 humidity 90 1440 < th dose dependent no NA NA
994 368.70 humidity 90 1440 < th dose dependent rect. 5 23