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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0551500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.05) R2 : 0.142
β1 : 1.72 (0.296) R2dD : 0.26 R2D : -0.425
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.37 (0.663) R2dE : 1.73 R2E : -1.69
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 49.2 (6.02) R2dD*E : 2.08 R2D*E : -1.72
γ1 : -0.152 (0.0871) R2dN8 : 0.00782 R2N8 : -0.0825
σ : 0.759
deviance : 265.72
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 69.55
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 4.55

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.53 0.746 2.85 1.69 0.412 -5.2 -0.271 49.5 -0.147 8.69 70 10 17 3
295.3 0.806 3.09 -0.362 0.355 -0.103 -0.804 -- -0.156 8.08 70 10 17 3
256.72 0.746 2.84 1.71 0.416 -5.22 -- 49.7 -0.14 8.89 70 10 17 2.91
293.05 0.797 3.08 -0.402 0.56 0.316 -- -- -0.168 8.59 93 2 18 3.95
265.72 0.759 2.86 1.72 -- -5.37 -- 49.2 -0.152 -- 69.55 10 17 4.55
295.47 0.806 3.09 -0.369 0.374 -- -0.739 -- -0.151 8.17 -- -- -- --
296.38 0.806 3.09 -0.385 0.382 -- -- -- -0.148 9.32 -- -- -- --
299.13 0.806 3.1 -0.387 -- -0.276 -- -- -0.151 -- 124.2 354 19.6 4.5
297.13 0.807 3.07 -- 0.545 0.301 -- -- -0.114 8.66 93 2 18 4
304.88 0.816 3.1 -0.387 -- -- -- -- -0.146 -- -- -- -- --
300.29 0.811 3.08 -- 0.382 -- -- -- -0.105 9.4 -- -- -- --
302.88 0.811 3.1 -- -- -0.271 -- -- -0.0977 -- 119.6 291 19 6.12
308.84 0.82 3.09 -- -- -- -- -- -0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.53 humidity 70.0 10 < th dose independent rect. 17 3
29 257.54 humidity 70.0 90 < th dose dependent rect. 17 3
142 263.89 wind 3.0 90 < th dose independent rect. 16 1
154 264.26 wind 1.0 30 < th dose dependent rect. 17 1
166 266.85 humidity 60.0 270 < th dose dependent rect. 14 1
185 268.12 wind 3.0 4320 > th dose dependent rect. 24 1
186 268.75 wind 5.0 4320 < th dose independent rect. 24 1
188 269.42 humidity 50.0 270 < th dose dependent rect. 14 4
206 269.46 wind 1.0 10 < th dose independent rect. 14 4
210 269.50 wind 5.0 4320 > th dose independent rect. 24 1
211 269.53 humidity 50.0 270 < th dose independent rect. 14 4
286 271.00 humidity 50.0 270 < th dose dependent sin 12 NA
311 271.32 humidity 50.0 4320 < th dose dependent rect. 15 2
337 271.70 humidity 50.0 270 < th dose independent sin 12 NA
359 272.51 atmosphere 1015.0 4320 > th dose dependent rect. 10 11
360 272.54 atmosphere 1015.0 4320 < th dose independent rect. 19 1
365 272.70 atmosphere 1015.0 4320 > th dose independent rect. 13 7
367 272.75 atmosphere 1015.0 4320 < th dose independent rect. 14 4
369 272.77 atmosphere 1015.0 4320 < th dose independent rect. 13 7
419 273.19 atmosphere 1015.0 4320 > th dose independent rect. 14 1
428 273.26 humidity 50.0 270 > th dose independent sin 13 NA
444 273.40 precipitation 0.1 4320 < th dose independent rect. 20 4
445 273.40 precipitation 0.1 4320 < th dose dependent rect. 20 4
461 273.52 precipitation 0.1 4320 < th dose independent rect. 22 1
463 273.52 precipitation 0.1 4320 < th dose dependent rect. 22 1
468 273.56 humidity 50.0 1440 < th dose independent rect. 15 2
477 273.62 precipitation 0.1 4320 > th dose independent rect. 20 4
484 273.68 atmosphere 1015.0 4320 < th dose independent rect. 17 3
491 273.75 temperature 20.0 10 > th dose independent rect. 2 13
525 273.94 precipitation 0.1 4320 > th dose independent rect. 22 1
527 273.94 precipitation 0.1 4320 > th dose dependent rect. 22 1
551 274.01 atmosphere 1015.0 4320 > th dose dependent sin 21 NA
581 274.14 humidity 50.0 1440 > th dose independent rect. 12 5
590 274.21 humidity 50.0 1440 < th dose independent rect. 13 4
615 274.51 precipitation 0.1 4320 > th dose dependent rect. 21 3
647 274.62 temperature 25.0 30 < th dose dependent rect. 5 6
686 274.94 humidity 50.0 1440 > th dose independent rect. 15 2
724 275.25 temperature 20.0 10 > th dose independent rect. 24 15
745 275.39 temperature 20.0 4320 > th dose independent rect. 3 3
750 275.42 temperature 20.0 4320 < th dose independent rect. 4 1
752 275.42 atmosphere 1015.0 4320 > th dose independent rect. 9 2
756 275.47 atmosphere 1015.0 4320 < th dose independent rect. 9 2
763 275.49 atmosphere 1015.0 4320 > th dose independent sin 22 NA
769 275.50 humidity 50.0 1440 < th dose dependent rect. 13 1
780 275.55 humidity 50.0 4320 < th dose dependent rect. 15 20
790 275.60 humidity 50.0 1440 < th dose dependent rect. 11 3
836 275.71 atmosphere 1015.0 4320 > th dose independent rect. 16 5
850 275.73 atmosphere 1015.0 4320 < th dose independent sin 22 NA
948 276.02 humidity 50.0 1440 > th dose independent rect. 12 13
958 276.06 temperature 20.0 10 > th dose independent sin 5 NA
961 276.06 temperature 20.0 270 < th dose independent rect. 3 16
983 276.14 humidity 50.0 1440 > th dose independent rect. 12 19