Os06g0550800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0550800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.74 | 0.756 | 7.63 | -1.6 | 2.38 | 0.827 | -0.368 | -3.43 | -0.563 | 13 | 19.2 | 4513 | -- | -- |
| 265.09 | 0.758 | 7.53 | -0.949 | 2.41 | 1.08 | -0.368 | -- | -0.477 | 13 | 12.39 | 10877 | -- | -- |
| 259.3 | 0.75 | 7.63 | -1.61 | 2.38 | 0.826 | -- | -3.4 | -0.564 | 13 | 19.16 | 4528 | -- | -- |
| 265.65 | 0.759 | 7.53 | -0.964 | 2.41 | 1.08 | -- | -- | -0.48 | 13 | 12.36 | 10882 | -- | -- |
| 440.88 | 0.983 | 7.65 | -1.45 | -- | 3 | -- | -2.89 | -0.782 | -- | 19.11 | 6007 | -- | -- |
| 283.94 | 0.79 | 7.45 | -0.286 | 2.36 | -- | -0.407 | -- | -0.133 | 13 | -- | -- | -- | -- |
| 284.63 | 0.79 | 7.46 | -0.3 | 2.36 | -- | -- | -- | -0.135 | 13 | -- | -- | -- | -- |
| 449.52 | 0.992 | 7.6 | -1.04 | -- | 3.56 | -- | -- | -0.654 | -- | 12.6 | 13252 | -- | -- |
| 275.89 | 0.778 | 7.48 | -- | 2.1 | 1.03 | -- | -- | -0.223 | 12.9 | 12.36 | 10882 | -- | -- |
| 632.1 | 1.17 | 7.49 | -0.39 | -- | -- | -- | -- | -0.181 | -- | -- | -- | -- | -- |
| 287.01 | 0.792 | 7.45 | -- | 2.37 | -- | -- | -- | -0.101 | 13 | -- | -- | -- | -- |
| 476.28 | 1.02 | 7.57 | -- | -- | 3.23 | -- | -- | -0.503 | -- | 12.6 | 13252 | -- | -- |
| 636.1 | 1.18 | 7.48 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 245.85 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 247.38 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 8 | 250.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 9 | 250.60 | radiation | 20 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 10 | 251.37 | radiation | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 11 | 251.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 12 | 251.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 13 | 251.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 14 | 251.49 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 15 | 251.49 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 18 | 251.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 20 | 251.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 28 | 251.82 | radiation | 30 | 720 | > th | dose independent | rect. | 14 | 19 |
| 33 | 251.85 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 49 | 251.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 54 | 252.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 61 | 252.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 19 |
| 73 | 252.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 74 | 252.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 77 | 252.40 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 11 | 12 |
| 80 | 252.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 82 | 252.47 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 83 | 252.47 | humidity | 90 | 14400 | > th | dose dependent | sin | 18 | NA |
| 96 | 252.59 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 2 |
| 107 | 252.66 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 116 | 252.71 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 168 | 253.02 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 175 | 253.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 178 | 253.05 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 179 | 253.05 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 194 | 253.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 208 | 253.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 212 | 253.21 | humidity | 80 | 14400 | < th | dose independent | sin | 1 | NA |
| 214 | 253.21 | radiation | 20 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 223 | 253.26 | humidity | 90 | 14400 | > th | dose dependent | sin | 0 | NA |
| 281 | 253.48 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 297 | 253.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 305 | 253.56 | humidity | 70 | 14400 | > th | dose dependent | rect. | 2 | 17 |
| 306 | 253.57 | humidity | 80 | 14400 | > th | dose independent | sin | 1 | NA |
| 309 | 253.57 | humidity | 70 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 321 | 253.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 331 | 253.64 | humidity | 70 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 335 | 253.66 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 338 | 253.67 | humidity | 70 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 395 | 253.86 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 431 | 253.94 | humidity | 90 | 14400 | > th | dose independent | sin | 19 | NA |
| 450 | 254.00 | humidity | 70 | 14400 | > th | dose dependent | sin | 0 | NA |
| 451 | 254.00 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 456 | 254.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 464 | 254.04 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 541 | 254.19 | humidity | 70 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 554 | 254.22 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 561 | 254.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 573 | 254.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 620 | 254.35 | humidity | 70 | 14400 | > th | dose dependent | rect. | 8 | 21 |
| 717 | 254.50 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 738 | 254.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 760 | 254.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 798 | 254.59 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 823 | 254.63 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 842 | 254.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 861 | 254.67 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 894 | 254.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 904 | 254.70 | humidity | 70 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 910 | 254.71 | humidity | 70 | 14400 | > th | dose dependent | no | NA | NA |
| 933 | 254.74 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 940 | 254.75 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 954 | 254.76 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 973 | 254.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 987 | 254.81 | humidity | 80 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 990 | 254.81 | radiation | 10 | 720 | > th | dose dependent | rect. | 15 | 2 |