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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0549900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAD linked oxidase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0447) R2 : 0.265
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.731 (0.107) R2dC : 0.078 R2C : 0.023
β3 : 2.08 (0.175) R2dE : 0.258 R2E : 0.182
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.173 (0.0973) R2dN8 : 0.00624 R2N8 : -0.0166
σ : 0.831
deviance : 318.66
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_____
C
peak time of C : 0.231
E
wheather : temperature
threshold : 34.9
memory length : 2309
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.44 0.821 3.68 -0.221 0.55 2.89 0.0878 4.39 0.147 0.833 25.46 4514 -- --
317.23 0.83 3.56 0.246 0.733 2.16 0.103 -- 0.209 0.704 34.6 2429 -- --
305.47 0.814 3.68 -0.227 0.55 2.88 -- 4.36 0.144 0.908 25.55 4512 -- --
317.13 0.829 3.56 0.264 0.748 2.17 -- -- 0.205 0.3 35.49 2358 -- --
324.18 0.839 3.67 -0.21 -- 2.85 -- 4.34 0.149 -- 25.4 4547 -- --
408.45 0.947 3.65 -0.55 0.494 -- 0.154 -- -0.236 0.458 -- -- -- --
408.53 0.947 3.65 -0.557 0.494 -- -- -- -0.237 0.62 -- -- -- --
336.37 0.854 3.55 0.495 -- 2.22 -- -- 0.207 -- 42.67 4592 -- --
318.66 0.831 3.57 -- 0.731 2.08 -- -- 0.173 0.231 34.9 2309 -- --
423.83 0.962 3.65 -0.539 -- -- -- -- -0.228 -- -- -- -- --
416.7 0.955 3.64 -- 0.486 -- -- -- -0.175 0.565 -- -- -- --
341.25 0.86 3.57 -- -- 1.96 -- -- 0.115 -- 61.93 4584 -- --
431.5 0.97 3.63 -- -- -- -- -- -0.168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 294.40 radiation 1.0 14400 > th dose independent rect. 14 4
6 294.82 radiation 1.0 14400 > th dose independent rect. 12 19
9 294.87 radiation 1.0 14400 > th dose independent rect. 9 9
11 294.93 radiation 1.0 14400 < th dose independent rect. 14 4
17 295.08 radiation 1.0 14400 < th dose independent rect. 12 19
31 295.28 radiation 1.0 14400 < th dose independent rect. 4 13
33 295.29 radiation 1.0 14400 > th dose independent rect. 4 13
42 295.29 radiation 1.0 14400 < th dose independent rect. 20 21
44 295.30 radiation 1.0 14400 < th dose independent rect. 23 18
54 295.42 radiation 1.0 14400 < th dose independent rect. 9 9
143 296.87 radiation 1.0 14400 > th dose independent sin 14 NA
203 296.98 radiation 1.0 14400 > th dose independent rect. 14 23
206 297.01 radiation 1.0 14400 > th dose independent no NA NA
255 297.03 radiation 1.0 14400 > th dose independent sin 23 NA
259 297.05 radiation 1.0 43200 < th dose independent rect. 12 9
260 297.05 radiation 1.0 43200 < th dose independent rect. 12 13
338 297.17 radiation 1.0 14400 < th dose independent rect. 4 2
345 297.20 radiation 1.0 14400 < th dose independent rect. 20 10
347 297.21 radiation 1.0 14400 < th dose independent rect. 23 7
392 297.32 radiation 1.0 14400 < th dose independent rect. 14 23
394 297.33 radiation 1.0 14400 < th dose independent rect. 4 21
401 297.34 radiation 1.0 14400 < th dose independent rect. 4 17
407 297.34 radiation 1.0 14400 < th dose independent rect. 23 22
412 297.35 radiation 1.0 14400 < th dose independent no NA NA
455 297.42 radiation 1.0 14400 > th dose independent rect. 4 2
492 297.49 radiation 1.0 14400 < th dose independent sin 13 NA
496 297.50 radiation 1.0 14400 < th dose independent sin 0 NA
497 297.51 radiation 1.0 43200 < th dose independent sin 17 NA
542 297.80 humidity 70.0 43200 > th dose dependent rect. 17 1
582 297.95 radiation 1.0 14400 < th dose dependent rect. 4 2
586 297.97 radiation 1.0 14400 < th dose dependent rect. 20 10
590 297.99 radiation 1.0 14400 < th dose dependent rect. 22 8
756 298.67 precipitation 0.1 43200 > th dose dependent rect. 20 7
784 298.88 humidity 90.0 43200 > th dose dependent rect. 22 1
785 298.91 radiation 1.0 14400 < th dose dependent rect. 17 13
791 299.02 radiation 1.0 14400 < th dose dependent rect. 15 3
793 299.03 humidity 70.0 43200 > th dose dependent rect. 14 5
798 299.08 humidity 80.0 43200 < th dose independent rect. 11 8
816 299.17 radiation 1.0 14400 < th dose dependent rect. 15 15
845 299.27 humidity 80.0 43200 > th dose independent rect. 11 8
860 299.33 temperature 25.0 4320 > th dose independent rect. 16 2
889 299.55 humidity 90.0 43200 < th dose independent rect. 12 10
900 299.69 humidity 80.0 43200 > th dose independent rect. 14 5
902 299.70 radiation 1.0 43200 < th dose dependent rect. 18 1
903 299.70 radiation 1.0 43200 < th dose dependent rect. 18 3
915 299.74 humidity 90.0 43200 < th dose independent rect. 15 4
960 299.87 humidity 90.0 43200 > th dose independent rect. 12 12
979 299.92 humidity 80.0 43200 > th dose independent rect. 15 3