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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0549600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAD linked oxidase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.0666) R2 : 0.153
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.76 (0.31) R2dE : 0.151 R2E : 0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.606 (0.142) R2dN8 : 0.0427 R2N8 : 0.00194
σ : 1.25
deviance : 716.55
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 87.96
memory length : 9698
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.02
open length of G : 0.537

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
693.62 1.24 3.58 0.404 0.197 1.54 -0.527 3.47 0.808 20.2 87.13 6662 6.03 0.95
715.29 1.25 3.58 0.871 0.0876 1.56 -0.847 -- 0.84 20.7 88.5 6664 6.04 0.935
693.11 1.23 3.58 0.368 0.188 1.48 -- 3.75 0.782 20 88.59 6659 6.08 0.942
706.6 1.24 3.68 0.922 0.217 2.09 -- -- 0.747 20.1 88.68 9555 6 0.88
692.22 1.23 3.59 0.44 -- 1.52 -- 2.94 0.796 -- 90.6 6658 6 1.1
769.48 1.3 3.74 1.55 0.196 -- -0.753 -- 0.499 19.3 -- -- -- --
770.4 1.3 3.74 1.57 0.225 -- -- -- 0.499 17.6 -- -- -- --
707.58 1.24 3.71 0.821 -- 2.07 -- -- 0.678 -- 88.01 9686 5.99 0.9
717.12 1.25 3.68 -- 0.0961 2.7 -- -- 0.651 22.6 87.97 9680 6 0.666
773.04 1.3 3.74 1.56 -- -- -- -- 0.494 -- -- -- -- --
835.13 1.35 3.78 -- 0.201 -- -- -- 0.325 17.9 -- -- -- --
716.55 1.25 3.7 -- -- 2.76 -- -- 0.606 -- 87.96 9698 6.02 0.537
837.22 1.35 3.78 -- -- -- -- -- 0.321 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 698.45 humidity 60.0 43200 < th dose independent rect. 15 2
2 698.54 humidity 60.0 43200 > th dose independent rect. 15 2
9 700.37 humidity 90.0 14400 > th dose independent rect. 1 1
15 701.40 humidity 90.0 43200 < th dose independent rect. 4 17
18 701.59 humidity 90.0 43200 > th dose dependent rect. 8 2
19 701.69 humidity 90.0 43200 < th dose independent rect. 19 1
22 701.84 humidity 90.0 43200 < th dose independent rect. 6 15
28 701.96 humidity 90.0 43200 < th dose independent rect. 7 2
38 702.07 humidity 90.0 43200 > th dose dependent rect. 7 6
47 702.14 humidity 90.0 43200 > th dose independent rect. 8 1
51 702.17 humidity 90.0 43200 < th dose independent rect. 4 10
55 702.22 humidity 80.0 43200 > th dose dependent rect. 16 3
56 702.24 humidity 90.0 43200 < th dose independent rect. 4 8
61 702.27 humidity 90.0 43200 < th dose independent sin 23 NA
64 702.30 humidity 90.0 43200 < th dose independent rect. 4 6
68 702.33 humidity 90.0 43200 < th dose independent rect. 15 6
73 702.38 humidity 90.0 43200 > th dose independent rect. 6 4
80 702.45 humidity 80.0 43200 > th dose dependent rect. 15 6
81 702.46 humidity 90.0 43200 < th dose independent rect. 11 10
93 702.57 humidity 80.0 43200 > th dose dependent rect. 7 15
108 702.64 humidity 80.0 43200 > th dose dependent rect. 17 1
110 702.65 humidity 90.0 43200 > th dose independent rect. 6 16
136 702.83 humidity 90.0 43200 > th dose independent rect. 6 7
137 702.83 humidity 90.0 43200 < th dose independent rect. 13 8
183 703.08 humidity 90.0 43200 > th dose independent rect. 4 14
184 703.08 humidity 80.0 14400 > th dose dependent rect. 20 11
222 703.22 humidity 90.0 43200 > th dose independent sin 0 NA
227 703.24 humidity 80.0 43200 > th dose independent rect. 16 1
318 703.69 humidity 90.0 43200 > th dose independent rect. 20 1
324 703.70 humidity 80.0 14400 > th dose dependent rect. 21 6
331 703.76 humidity 90.0 43200 > th dose independent rect. 11 11
341 703.80 humidity 80.0 43200 > th dose dependent sin 22 NA
432 704.26 humidity 80.0 14400 > th dose dependent sin 10 NA
435 704.27 humidity 80.0 14400 > th dose dependent rect. 24 9
454 704.38 humidity 90.0 43200 > th dose independent rect. 17 4
456 704.38 humidity 90.0 43200 > th dose independent rect. 15 6
508 704.67 humidity 90.0 14400 < th dose independent rect. 21 10
574 704.96 precipitation 0.1 43200 > th dose dependent rect. 2 6
638 705.17 precipitation 0.1 43200 < th dose independent rect. 7 1
640 705.17 precipitation 0.1 43200 < th dose dependent rect. 7 1
655 705.27 humidity 80.0 14400 > th dose dependent rect. 1 1
687 705.37 humidity 90.0 43200 < th dose independent rect. 15 23
690 705.38 humidity 80.0 43200 < th dose independent rect. 16 1
696 705.42 precipitation 0.1 43200 > th dose independent rect. 2 6
707 705.45 humidity 90.0 43200 < th dose independent rect. 22 1
731 705.55 precipitation 0.1 43200 < th dose independent rect. 2 6
733 705.55 precipitation 0.1 43200 < th dose dependent rect. 2 6
737 705.56 temperature 25.0 43200 < th dose dependent rect. 16 2
745 705.59 precipitation 0.1 43200 > th dose dependent rect. 23 9
753 705.61 humidity 90.0 43200 < th dose independent no NA NA
762 705.62 humidity 90.0 43200 < th dose independent rect. 22 23
778 705.69 humidity 90.0 43200 < th dose independent rect. 11 23
779 705.70 precipitation 0.1 43200 > th dose independent rect. 23 1
782 705.70 precipitation 0.1 43200 > th dose dependent rect. 23 1
787 705.72 humidity 90.0 14400 > th dose independent rect. 22 4
792 705.74 humidity 90.0 43200 < th dose independent rect. 19 23
847 705.88 radiation 1.0 14400 < th dose independent rect. 2 9
868 705.93 radiation 1.0 14400 < th dose independent rect. 19 16
870 705.94 precipitation 0.1 43200 < th dose independent rect. 23 1
876 705.94 precipitation 0.1 43200 < th dose dependent rect. 23 1
877 705.94 humidity 80.0 14400 > th dose dependent rect. 4 4
883 705.95 radiation 1.0 14400 < th dose independent rect. 21 14
900 705.99 radiation 1.0 14400 > th dose independent rect. 4 7