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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0549300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAD linked oxidase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.28 (0.0569) R2 : 0.611
β1 : -4.42 (0.211) R2dD : 0.415 R2D : 0.341
β2 : 1.84 (0.139) R2dC : 0.15 R2C : 0.122
β3 : 0.572 (0.245) R2dE : 0.00744 R2E : 0.0187
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.5 (1.05) R2dD*E : 0.0364 R2D*E : 0.0227
γ1 : -0.941 (0.122) R2dN8 : 0.0714 R2N8 : -0.0142
σ : 1.04
deviance : 503.02
__
_____
C
peak time of C : 8.88
E
wheather : atmosphere
threshold : 1001
memory length : 6837
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
500.8 1.05 6.28 -4.4 1.84 0.571 -0.809 5.51 -0.943 8.86 1001 6841 -- --
524.06 1.07 6.22 -4.24 1.81 1.31 -0.816 -- -0.965 8.84 999.6 5281 -- --
503.02 1.04 6.28 -4.42 1.84 0.572 -- 5.5 -0.941 8.88 1001 6837 -- --
526.01 1.07 6.22 -4.15 1.84 1.39 -- -- -0.985 8.89 999.7 5281 -- --
696.48 1.23 6.32 -4.43 -- 0.56 -- 5.49 -0.923 -- 1001 6840 -- --
578.07 1.13 6.19 -4.37 1.84 -- -0.825 -- -0.85 8.87 -- -- -- --
580.37 1.13 6.2 -4.4 1.84 -- -- -- -0.851 8.87 -- -- -- --
719.78 1.25 6.27 -4.15 -- 1.38 -- -- -0.952 -- 999.8 5158 -- --
966.17 1.45 6.14 -- 1.84 2.09 -- -- -0.602 9.06 999.6 5233 -- --
773.17 1.3 6.24 -4.4 -- -- -- -- -0.838 -- -- -- -- --
1091.05 1.55 6.08 -- 1.83 -- -- -- -0.36 9.06 -- -- -- --
1160.48 1.59 6.19 -- -- 2.09 -- -- -0.589 -- 999.7 5161 -- --
1284.22 1.67 6.13 -- -- -- -- -- -0.349 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 459.66 temperature 30 43200 > th dose dependent rect. 11 1
3 460.37 temperature 30 43200 > th dose dependent rect. 8 4
18 460.87 temperature 30 43200 < th dose independent rect. 5 5
21 460.91 temperature 30 43200 < th dose independent rect. 1 9
22 460.92 temperature 30 43200 < th dose independent rect. 7 3
23 460.92 temperature 30 43200 < th dose independent rect. 19 15
28 461.01 temperature 30 43200 < th dose independent rect. 22 12
32 461.24 temperature 30 43200 > th dose independent rect. 8 2
194 464.37 temperature 30 43200 > th dose dependent sin 8 NA
196 464.44 temperature 30 43200 > th dose independent sin 8 NA
199 464.51 temperature 30 43200 < th dose independent sin 8 NA
262 466.38 wind 3 43200 > th dose independent rect. 13 1
275 467.13 wind 5 43200 < th dose dependent rect. 14 1
356 468.05 temperature 25 43200 > th dose dependent rect. 6 1
364 468.22 humidity 90 14400 < th dose independent rect. 23 6
380 468.58 wind 3 43200 < th dose independent rect. 13 2
599 470.47 temperature 25 43200 > th dose dependent rect. 24 1
601 470.48 temperature 30 43200 > th dose dependent no NA NA
843 471.29 humidity 90 14400 < th dose independent rect. 1 2
877 471.60 temperature 30 43200 > th dose independent no NA NA
971 471.72 temperature 30 43200 < th dose independent rect. 5 16
972 471.72 temperature 30 43200 < th dose independent rect. 5 18
973 471.73 temperature 30 43200 < th dose independent no NA NA