Os06g0548100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nectarin 5 (Fragment).
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Os06g0548100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nectarin 5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.44 | 0.371 | 8.23 | 1.32 | 0.463 | -0.831 | 0.261 | 0.166 | 0.485 | 22.9 | 82.53 | 849 | -- | -- |
| 62.34 | 0.368 | 8.23 | 1.32 | 0.445 | -0.845 | 0.26 | -- | 0.488 | 23.3 | 81.99 | 911 | -- | -- |
| 62.47 | 0.368 | 8.22 | 1.34 | 0.443 | -0.875 | -- | 0.415 | 0.485 | 23.6 | 81.46 | 910 | -- | -- |
| 62.61 | 0.369 | 8.23 | 1.3 | 0.444 | -0.841 | -- | -- | 0.485 | 23.7 | 82 | 928 | -- | -- |
| 66.26 | 0.381 | 8.22 | 1.22 | -- | -0.694 | -- | 0.107 | 0.486 | -- | 81.46 | 910 | -- | -- |
| 74.75 | 0.405 | 8.22 | 1.19 | 0.227 | -- | -0.0437 | -- | 0.514 | 1.98 | -- | -- | -- | -- |
| 74.76 | 0.405 | 8.22 | 1.19 | 0.226 | -- | -- | -- | 0.515 | 1.89 | -- | -- | -- | -- |
| 66.28 | 0.381 | 8.22 | 1.22 | -- | -0.691 | -- | -- | 0.486 | -- | 81.46 | 910 | -- | -- |
| 104.35 | 0.478 | 8.24 | -- | 0.166 | -0.814 | -- | -- | 0.396 | 15 | 104.6 | 908 | -- | -- |
| 77.85 | 0.412 | 8.21 | 1.2 | -- | -- | -- | -- | 0.52 | -- | -- | -- | -- | -- |
| 111.91 | 0.495 | 8.25 | -- | 0.248 | -- | -- | -- | 0.382 | 2.02 | -- | -- | -- | -- |
| 104.93 | 0.479 | 8.24 | -- | -- | -0.62 | -- | -- | 0.39 | -- | 94 | 1708 | -- | -- |
| 115.62 | 0.502 | 8.24 | -- | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.56 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 61.45 | humidity | 50 | 10 | > th | dose dependent | sin | 18 | NA |
| 5 | 61.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 6 | 61.55 | humidity | 60 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 14 | 61.71 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 15 |
| 35 | 61.95 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 45 | 62.06 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 47 | 62.07 | humidity | 60 | 720 | > th | dose dependent | sin | 21 | NA |
| 54 | 62.10 | humidity | 90 | 10 | < th | dose dependent | sin | 18 | NA |
| 72 | 62.29 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 73 | 62.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 102 | 62.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 105 | 62.44 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 106 | 62.45 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 117 | 62.50 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 14 |
| 120 | 62.50 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 121 | 62.51 | humidity | 80 | 720 | < th | dose independent | sin | 23 | NA |
| 130 | 62.54 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 20 |
| 143 | 62.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 162 | 62.67 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 184 | 62.72 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 185 | 62.73 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 249 | 62.90 | humidity | 60 | 720 | > th | dose dependent | sin | 18 | NA |
| 262 | 62.93 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 16 |
| 271 | 62.95 | humidity | 70 | 720 | > th | dose independent | sin | 16 | NA |
| 279 | 62.96 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 286 | 62.98 | humidity | 60 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 349 | 63.11 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 22 |
| 363 | 63.12 | humidity | 80 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 374 | 63.15 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 382 | 63.16 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 426 | 63.23 | humidity | 60 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 484 | 63.30 | humidity | 60 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 568 | 63.41 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 23 |
| 693 | 63.55 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 7 |
| 699 | 63.55 | humidity | 90 | 720 | < th | dose dependent | sin | 23 | NA |
| 720 | 63.57 | humidity | 80 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 721 | 63.57 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 748 | 63.60 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 22 |
| 749 | 63.60 | humidity | 80 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 802 | 63.66 | humidity | 70 | 720 | > th | dose independent | no | NA | NA |
| 808 | 63.66 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 868 | 63.72 | humidity | 70 | 720 | > th | dose independent | rect. | 3 | 23 |
| 924 | 63.76 | humidity | 70 | 720 | > th | dose independent | rect. | 1 | 23 |