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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0547400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase P7 (EC 1.11.1.7) (TP7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.78 (0.0793) R2 : 0.636
β1 : -4.01 (0.3) R2dD : 0.158 R2D : 0.208
β2 : 3.17 (0.188) R2dC : 0.225 R2C : 0.238
β3 : 4.98 (0.393) R2dE : 0.153 R2E : 0.245
β4 : -4 (0.732) R2dD*C : 0.0236 R2D*C : 0.0203
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0516 (0.176) R2dN8 : 0.000143 R2N8 : -0.000446
σ : 1.46
deviance : 986.9
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_____
C
peak time of C : 1.39
E
wheather : radiation
threshold : 0.8286
memory length : 1449
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 19.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
990.63 1.48 4.78 -4.02 3.15 4.84 -3.98 -0.437 0.00255 1.37 0.96 1449 11.1 19.3
986.9 1.46 4.78 -4.01 3.17 4.98 -4 -- 0.0516 1.39 0.8286 1449 11.1 19.4
1051.65 1.51 4.77 -3.67 3 4.9 -- -1.08 -0.0216 1.35 0.9997 1461 11.1 19.5
1048.55 1.51 4.78 -3.87 3.07 5.07 -- -- 0.0654 1.31 0.8288 1452 11.1 19.4
1277.68 1.66 4.61 -4.25 -- 5.79 -- -0.958 0.606 -- 20.16 1763 12.3 18.2
1344.08 1.72 4.93 -5.04 3.31 -- -4.67 -- -0.626 1.23 -- -- -- --
1433.36 1.77 4.92 -4.87 3.31 -- -- -- -0.599 1.12 -- -- -- --
1291.64 1.67 4.61 -4.36 -- 5.89 -- -- 0.492 -- 20.11 1762 12.4 17.8
1373.82 1.73 4.78 -- 2.91 6.31 -- -- 0.525 1.26 0.6689 1454 11.1 19.6
2114.51 2.15 4.86 -4.75 -- -- -- -- -0.533 -- -- -- -- --
2059.48 2.12 4.79 -- 3.23 -- -- -- -0.0565 1.06 -- -- -- --
1460.84 1.78 4.7 -- -- 7.14 -- -- 0.457 -- 0.55 1600 11.1 19.7
2709.05 2.43 4.75 -- -- -- -- -- -0.00665 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 995.50 radiation 1 1440 < th dose independent rect. 11 19
2 996.47 radiation 1 1440 > th dose independent rect. 11 19
15 1006.40 wind 7 4320 < th dose independent rect. 17 1
27 1018.19 wind 7 4320 > th dose independent rect. 17 1
29 1019.72 radiation 1 1440 < th dose independent rect. 11 12
31 1019.93 radiation 1 1440 < th dose independent rect. 11 16
33 1019.99 radiation 1 1440 > th dose independent rect. 11 8
44 1020.20 radiation 1 1440 < th dose dependent rect. 11 16
46 1020.26 radiation 1 1440 < th dose dependent rect. 11 12
53 1020.56 radiation 1 1440 < th dose independent rect. 11 8
59 1021.19 radiation 1 1440 < th dose dependent rect. 11 8
104 1023.49 radiation 1 1440 < th dose independent sin 15 NA
112 1024.18 radiation 1 1440 > th dose independent sin 15 NA
150 1026.11 radiation 1 1440 < th dose dependent sin 22 NA
161 1027.49 radiation 1 1440 < th dose independent sin 21 NA
167 1027.94 radiation 1 1440 > th dose independent sin 21 NA
256 1032.42 wind 5 4320 > th dose dependent rect. 17 2
289 1038.07 radiation 1 1440 < th dose independent rect. 5 18
292 1038.31 radiation 1 1440 < th dose independent rect. 5 22
298 1038.69 radiation 1 1440 < th dose independent rect. 5 14
345 1040.31 radiation 1 1440 < th dose independent rect. 2 21
349 1040.40 radiation 1 1440 > th dose independent rect. 5 14
374 1040.84 radiation 1 1440 < th dose independent rect. 20 23
376 1040.87 radiation 1 1440 < th dose independent no NA NA
378 1040.94 radiation 1 1440 < th dose independent rect. 2 17
414 1042.63 radiation 1 1440 > th dose independent no NA NA
478 1044.86 radiation 1 1440 < th dose dependent rect. 5 13
497 1046.07 radiation 1 1440 < th dose dependent rect. 20 22
504 1046.44 radiation 1 1440 < th dose dependent rect. 2 16
541 1049.11 radiation 1 1440 < th dose independent rect. 16 23
553 1050.98 radiation 1 1440 > th dose independent rect. 16 23
554 1051.01 radiation 1 1440 < th dose dependent rect. 5 18
556 1051.10 radiation 1 1440 < th dose dependent rect. 5 22
604 1052.78 radiation 1 1440 < th dose dependent rect. 2 21
624 1053.27 radiation 1 1440 < th dose dependent no NA NA
638 1053.48 radiation 1 1440 < th dose dependent rect. 22 23
789 1062.85 wind 5 1440 < th dose independent rect. 13 10
802 1063.73 radiation 1 1440 < th dose dependent rect. 15 23
825 1064.49 radiation 1 1440 < th dose dependent rect. 17 23
931 1072.90 wind 5 1440 < th dose independent rect. 21 1