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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0547100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Class III peroxidase GvPx2b (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.023) R2 : 0.00494
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0727 (0.0483) R2dN8 : 0.00638 R2N8 : 0.00494
σ : 0.432
deviance : 85.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81 0.423 2.93 -0.174 0.2 -0.177 -0.808 0.556 0.00227 4.6 90.55 3 -- --
82.26 0.422 2.93 -0.138 0.205 -0.155 -0.48 -- 0.0134 5.12 90.36 3 -- --
82.3 0.423 2.93 -0.153 0.207 -0.184 -- 0.302 0.00582 4.73 90.64 3 -- --
82.76 0.424 2.93 -0.133 0.214 -0.177 -- -- 0.00986 4.7 90.02 3 -- --
84 0.427 2.93 -0.161 -- -0.101 -- 0.301 0.0284 -- 90.33 4 -- --
83.7 0.429 2.92 -0.162 0.116 -- -0.553 -- 0.0499 5.91 -- -- -- --
84.41 0.43 2.92 -0.165 0.116 -- -- -- 0.0524 6.7 -- -- -- --
84.47 0.428 2.93 -0.146 -- -0.0861 -- -- 0.0323 -- 89.81 3 -- --
83.21 0.425 2.93 -- 0.22 -0.189 -- -- 0.0217 4.6 90.16 2 -- --
85.11 0.431 2.93 -0.163 -- -- -- -- 0.0547 -- -- -- -- --
85.13 0.432 2.92 -- 0.114 -- -- -- 0.0708 6.79 -- -- -- --
85.02 0.429 2.93 -- -- -0.095 -- -- 0.046 -- 89.81 3 -- --
85.81 0.432 2.92 -- -- -- -- -- 0.0727 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.36 radiation 10.0 10 > th dose independent rect. 6 1
27 64.36 radiation 10.0 10 > th dose dependent rect. 6 1
53 68.03 atmosphere 1005.0 10 > th dose dependent rect. 6 1
57 68.70 wind 3.0 30 < th dose dependent rect. 6 1
59 70.16 temperature 30.0 30 < th dose dependent rect. 6 1
62 70.55 humidity 80.0 30 > th dose dependent rect. 6 1
70 71.44 wind 3.0 30 < th dose independent rect. 6 1
77 72.13 humidity 90.0 10 < th dose independent rect. 6 1
79 72.29 atmosphere 1005.0 30 > th dose independent rect. 6 1
82 72.43 wind 9.0 1440 < th dose independent rect. 7 1
83 72.43 temperature 10.0 1440 > th dose independent rect. 7 1
87 72.43 temperature 30.0 1440 < th dose independent rect. 7 1
91 72.43 humidity 50.0 1440 > th dose independent rect. 7 1
96 72.43 atmosphere 995.0 1440 > th dose independent rect. 7 1
97 72.43 atmosphere 1015.0 1440 < th dose independent rect. 7 1
98 72.43 temperature 10.0 1440 > th dose independent rect. 8 23
101 72.45 wind 1.0 30 > th dose independent rect. 6 1
102 72.47 temperature 25.0 10 > th dose independent rect. 6 1
106 72.48 temperature 10.0 30 > th dose independent rect. 6 1
108 72.48 temperature 30.0 30 < th dose independent rect. 6 1
109 72.48 humidity 50.0 30 > th dose independent rect. 6 1
114 72.48 atmosphere 1015.0 30 < th dose independent rect. 6 1
115 72.48 radiation 20.0 30 < th dose independent rect. 6 1
118 72.48 precipitation 0.1 30 < th dose independent rect. 6 1
119 72.48 temperature 10.0 30 > th dose independent rect. 7 23
120 72.48 precipitation 0.1 30 < th dose dependent rect. 6 1
122 72.56 radiation 20.0 10 < th dose dependent rect. 6 1
131 73.00 radiation 1.0 90 < th dose independent rect. 10 1
133 73.00 radiation 1.0 10 < th dose independent rect. 7 5
135 73.00 radiation 1.0 90 < th dose dependent rect. 10 1
137 73.00 radiation 1.0 10 < th dose dependent rect. 7 5
141 73.22 temperature 10.0 30 > th dose dependent rect. 6 1
165 73.52 wind 9.0 30 < th dose independent rect. 7 23
168 73.60 radiation 10.0 10 < th dose dependent rect. 11 1
189 74.54 humidity 90.0 10 < th dose dependent rect. 6 1
191 74.61 radiation 1.0 10 < th dose independent rect. 11 1
239 74.87 atmosphere 995.0 30 > th dose independent rect. 7 23
291 75.74 precipitation 0.1 30 < th dose independent rect. 7 23
293 75.74 precipitation 0.1 30 < th dose dependent rect. 7 23
300 75.83 atmosphere 1015.0 30 < th dose dependent rect. 6 1
369 77.50 temperature 30.0 30 < th dose independent rect. 7 23
371 77.52 wind 1.0 30 > th dose dependent rect. 6 1
412 77.85 humidity 90.0 30 < th dose independent rect. 21 11
418 77.91 humidity 90.0 90 < th dose dependent rect. 4 3
427 77.99 radiation 20.0 10 < th dose dependent rect. 6 7
446 78.23 radiation 20.0 10 < th dose independent rect. 12 1
460 78.38 atmosphere 1010.0 10 < th dose independent rect. 24 11
461 78.38 humidity 50.0 30 > th dose independent rect. 7 23
476 78.48 humidity 90.0 10 < th dose dependent rect. 4 3
513 78.83 humidity 90.0 10 < th dose dependent rect. 21 11
559 79.09 humidity 60.0 720 > th dose independent rect. 19 12
563 79.12 temperature 10.0 720 > th dose independent rect. 7 12
564 79.12 temperature 10.0 720 > th dose independent rect. 19 12
565 79.12 temperature 30.0 720 < th dose independent rect. 19 12
567 79.12 atmosphere 995.0 720 > th dose independent rect. 7 12
568 79.12 atmosphere 995.0 720 > th dose independent rect. 19 12
569 79.12 atmosphere 1015.0 720 < th dose independent rect. 7 12
570 79.12 radiation 40.0 720 < th dose independent rect. 19 12
573 79.13 wind 9.0 720 < th dose independent rect. 19 12
588 79.19 precipitation 0.1 720 < th dose independent rect. 19 12
590 79.19 precipitation 0.1 720 < th dose dependent rect. 19 12
601 79.29 atmosphere 995.0 10 > th dose dependent rect. 21 11
604 79.31 precipitation 0.1 720 < th dose independent rect. 7 12
605 79.31 precipitation 0.1 720 < th dose dependent rect. 7 12
677 79.53 humidity 90.0 30 < th dose independent rect. 11 21
727 79.72 humidity 70.0 720 > th dose independent rect. 19 4
759 79.79 precipitation 0.1 720 < th dose independent rect. 11 20
762 79.79 precipitation 0.1 720 < th dose dependent rect. 11 20
785 79.85 radiation 20.0 10 < th dose dependent rect. 6 18
786 79.86 temperature 10.0 720 > th dose independent rect. 19 4
787 79.86 temperature 30.0 720 < th dose independent rect. 19 4
789 79.86 atmosphere 995.0 720 > th dose independent rect. 19 4
790 79.86 radiation 1.0 720 < th dose independent rect. 19 4
798 79.86 temperature 10.0 720 > th dose independent rect. 23 20
799 79.86 radiation 1.0 720 < th dose dependent rect. 19 4
805 79.87 wind 9.0 720 < th dose independent rect. 19 4
811 79.88 wind 9.0 720 < th dose independent rect. 7 4
812 79.88 temperature 10.0 720 > th dose independent rect. 7 4
813 79.88 atmosphere 995.0 720 > th dose independent rect. 7 4
814 79.88 atmosphere 1015.0 720 < th dose independent rect. 7 4
815 79.88 temperature 10.0 720 > th dose independent rect. 11 20
820 79.89 precipitation 0.1 720 < th dose independent rect. 7 4
822 79.89 precipitation 0.1 720 < th dose dependent rect. 7 4
823 79.89 atmosphere 1010.0 10 < th dose dependent rect. 24 11
826 79.90 atmosphere 995.0 720 > th dose independent rect. 11 20
829 79.92 humidity 50.0 720 > th dose independent rect. 7 4
830 79.92 precipitation 0.1 720 < th dose independent rect. 19 4
833 79.92 precipitation 0.1 720 < th dose dependent rect. 19 4
843 79.94 atmosphere 995.0 720 > th dose independent rect. 23 20
844 79.95 wind 9.0 720 < th dose independent rect. 7 12
861 80.01 radiation 20.0 10 < th dose independent rect. 11 13
862 80.01 radiation 10.0 10 < th dose independent rect. 6 18
872 80.06 wind 1.0 720 > th dose independent rect. 19 4
880 80.08 radiation 30.0 720 < th dose independent rect. 15 4
932 80.21 humidity 90.0 30 < th dose independent sin 7 NA
939 80.22 wind 1.0 90 > th dose independent rect. 21 10
940 80.22 wind 9.0 30 < th dose dependent rect. 7 23
955 80.24 humidity 90.0 720 < th dose independent rect. 20 2
956 80.24 atmosphere 1015.0 30 < th dose independent rect. 7 23
971 80.27 humidity 50.0 720 > th dose dependent rect. 22 6
979 80.28 radiation 40.0 720 < th dose dependent rect. 19 12
991 80.29 temperature 30.0 720 < th dose independent rect. 7 4
993 80.29 wind 1.0 270 > th dose independent rect. 19 12