Os06g0546500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Class III peroxidase GvPx2b (Fragment).
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Os06g0546500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Class III peroxidase GvPx2b (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.43 | 0.746 | 2.95 | 0.00853 | 0.116 | -1.32 | 0.00493 | -2.87 | -0.0947 | 1.92 | 8.8 | 1656 | -- | -- |
| 252.81 | 0.741 | 2.92 | -0.0371 | 0.125 | -0.721 | 0.0204 | -- | -0.0771 | 1.98 | 8.701 | 1656 | -- | -- |
| 252.43 | 0.74 | 2.95 | 0.0084 | 0.116 | -1.32 | -- | -2.87 | -0.0947 | 1.91 | 8.8 | 1656 | -- | -- |
| 252.78 | 0.74 | 2.92 | -0.0715 | 0.12 | -0.72 | -- | -- | -0.0911 | 2.02 | 8.703 | 1656 | -- | -- |
| 252.46 | 0.74 | 2.94 | -0.0276 | -- | -1.34 | -- | -2.83 | -0.105 | -- | 11.23 | 1635 | -- | -- |
| 258.23 | 0.753 | 2.94 | -0.198 | 0.12 | -- | 0.00154 | -- | -0.144 | 1.31 | -- | -- | -- | -- |
| 258.23 | 0.753 | 2.94 | -0.198 | 0.12 | -- | -- | -- | -0.144 | 1.31 | -- | -- | -- | -- |
| 252.48 | 0.74 | 2.93 | -0.111 | -- | -0.741 | -- | -- | -0.108 | -- | 10.9 | 1665 | -- | -- |
| 252.9 | 0.741 | 2.92 | -- | 0.118 | -0.747 | -- | -- | -0.0796 | 1.84 | 8.709 | 1656 | -- | -- |
| 259.11 | 0.752 | 2.93 | -0.194 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 259.26 | 0.753 | 2.93 | -- | 0.116 | -- | -- | -- | -0.122 | 1.24 | -- | -- | -- | -- |
| 252.77 | 0.74 | 2.92 | -- | -- | -0.765 | -- | -- | -0.0918 | -- | 11.33 | 1659 | -- | -- |
| 260.1 | 0.753 | 2.93 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.96 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 2 |
| 2 | 237.09 | wind | 9.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 6 | 237.09 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 26 | 237.59 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 68 | 238.64 | wind | 7.0 | 90 | > th | dose independent | rect. | 22 | 1 |
| 111 | 240.20 | wind | 1.0 | 90 | < th | dose dependent | rect. | 3 | 1 |
| 112 | 240.22 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 122 | 240.22 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 135 | 240.60 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 142 | 240.60 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 157 | 240.69 | wind | 7.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 163 | 241.04 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 2 |
| 204 | 241.24 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 2 |
| 205 | 241.30 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 206 | 241.36 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 2 |
| 207 | 241.37 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 2 | 2 |
| 215 | 241.98 | humidity | 80.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 271 | 243.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 285 | 244.00 | wind | 7.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 304 | 244.35 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 337 | 245.21 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 23 |
| 338 | 245.21 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 348 | 245.55 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 378 | 246.01 | wind | 7.0 | 720 | < th | dose independent | rect. | 18 | 14 |
| 399 | 246.18 | wind | 7.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 400 | 246.18 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 413 | 246.26 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 1 |
| 414 | 246.26 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 424 | 246.43 | temperature | 25.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 443 | 246.66 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 458 | 246.83 | wind | 7.0 | 720 | < th | dose independent | rect. | 20 | 10 |
| 471 | 246.91 | precipitation | 0.1 | 10 | < th | dose independent | sin | 21 | NA |
| 472 | 246.91 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 21 | NA |
| 512 | 247.27 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 514 | 247.29 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 519 | 247.34 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 520 | 247.34 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 523 | 247.34 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 526 | 247.34 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 529 | 247.34 | radiation | 1.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 534 | 247.34 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 23 |
| 535 | 247.34 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 558 | 247.50 | precipitation | 0.1 | 10 | > th | dose independent | sin | 21 | NA |
| 577 | 247.58 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 21 | NA |
| 581 | 247.59 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 592 | 247.63 | wind | 7.0 | 720 | < th | dose independent | rect. | 18 | 7 |
| 610 | 247.73 | wind | 9.0 | 10 | < th | dose independent | rect. | 4 | 23 |
| 635 | 247.88 | wind | 3.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 636 | 247.89 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 652 | 248.03 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 666 | 248.09 | wind | 1.0 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 682 | 248.22 | wind | 5.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 727 | 248.44 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 763 | 248.58 | wind | 9.0 | 720 | < th | dose independent | rect. | 4 | 19 |
| 791 | 248.82 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 12 |
| 806 | 248.92 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 860 | 249.13 | wind | 9.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 877 | 249.17 | wind | 1.0 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 886 | 249.19 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 890 | 249.20 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 895 | 249.23 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 906 | 249.28 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 23 |
| 907 | 249.29 | wind | 9.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 918 | 249.32 | wind | 1.0 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 926 | 249.36 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 927 | 249.37 | wind | 9.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 942 | 249.45 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 23 |
| 944 | 249.48 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 956 | 249.55 | wind | 9.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 965 | 249.58 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 24 | 4 |
| 984 | 249.62 | wind | 7.0 | 720 | > th | dose independent | rect. | 17 | 15 |
| 994 | 249.64 | wind | 1.0 | 30 | < th | dose independent | rect. | 15 | 11 |
| 995 | 249.64 | wind | 7.0 | 720 | > th | dose independent | rect. | 17 | 12 |