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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0546000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0107) R2 : 0.00804
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0435 (0.0226) R2dN8 : 0.0104 R2N8 : 0.00804
σ : 0.202
deviance : 18.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.19 0.195 3.08 0.0923 0.0803 0.0499 -0.153 0.47 -0.0321 7.76 20.32 120 -- --
17.79 0.198 3.08 0.083 0.0603 0.0861 -0.259 -- -0.0368 4.82 20.32 120 -- --
17.25 0.193 3.08 0.0969 0.0801 0.0506 -- 0.452 -0.0311 7.63 20.09 121 -- --
17.76 0.198 3.08 0.0932 0.0665 0.0775 -- -- -0.0305 6.56 17.51 101 -- --
17.59 0.195 3.08 0.087 -- 0.0583 -- 0.435 -0.0303 -- 20.06 120 -- --
17.91 0.198 3.08 0.0927 0.0928 -- 0.166 -- -0.0328 10.3 -- -- -- --
18 0.199 3.08 0.0984 0.0962 -- -- -- -0.033 9.41 -- -- -- --
17.99 0.198 3.08 0.0947 -- 0.0808 -- -- -0.029 -- 17.51 101 -- --
17.99 0.199 3.08 -- 0.0676 0.0816 -- -- -0.0407 6.28 17.51 101 -- --
18.54 0.201 3.08 0.0979 -- -- -- -- -0.0326 -- -- -- -- --
18.25 0.2 3.08 -- 0.0962 -- -- -- -0.0439 9.33 -- -- -- --
18.22 0.199 3.08 -- -- 0.0819 -- -- -0.0394 -- 17.51 101 -- --
18.79 0.202 3.08 -- -- -- -- -- -0.0435 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.66 atmosphere 1000.0 30 > th dose independent rect. 13 20
6 16.77 atmosphere 1000.0 10 > th dose independent rect. 13 17
25 16.87 atmosphere 1000.0 90 < th dose independent rect. 23 3
53 16.94 atmosphere 1000.0 10 < th dose independent rect. 17 10
63 16.95 atmosphere 1000.0 10 < th dose independent rect. 22 5
71 16.96 atmosphere 1000.0 270 < th dose independent rect. 22 1
83 16.97 atmosphere 1000.0 270 > th dose independent rect. 21 10
88 16.97 atmosphere 1000.0 30 > th dose independent rect. 21 23
96 16.99 humidity 90.0 30 < th dose independent rect. 3 2
103 16.99 humidity 90.0 10 < th dose dependent rect. 3 2
104 16.99 radiation 30.0 90 < th dose dependent rect. 2 13
105 17.00 atmosphere 1000.0 30 > th dose independent sin 12 NA
114 17.00 wind 1.0 90 < th dose dependent rect. 8 1
115 17.00 atmosphere 1005.0 10 > th dose dependent rect. 2 3
117 17.01 atmosphere 1000.0 30 > th dose independent sin 14 NA
126 17.01 radiation 20.0 90 < th dose independent rect. 2 13
137 17.01 atmosphere 1000.0 30 > th dose independent rect. 3 23
151 17.03 atmosphere 1000.0 10 < th dose independent rect. 7 20
157 17.04 wind 9.0 1440 < th dose independent rect. 21 1
162 17.04 humidity 90.0 90 > th dose independent rect. 3 11
171 17.05 radiation 20.0 90 > th dose independent sin 7 NA
181 17.05 atmosphere 995.0 90 > th dose independent rect. 3 16
184 17.05 humidity 90.0 10 < th dose independent rect. 20 18
188 17.06 radiation 10.0 270 > th dose independent sin 10 NA
191 17.06 wind 7.0 720 > th dose independent rect. 14 1
198 17.06 atmosphere 1000.0 10 > th dose independent rect. 13 7
204 17.06 humidity 90.0 90 > th dose independent rect. 3 16
210 17.06 radiation 10.0 270 > th dose independent rect. 14 20
214 17.06 atmosphere 995.0 10 > th dose dependent rect. 13 7
229 17.07 humidity 90.0 90 > th dose independent rect. 3 9
254 17.07 atmosphere 1000.0 10 < th dose dependent rect. 17 10
257 17.07 humidity 80.0 90 > th dose dependent rect. 3 12
266 17.07 radiation 20.0 10 < th dose dependent rect. 21 23
268 17.08 temperature 10.0 1440 > th dose independent rect. 21 1
271 17.08 temperature 30.0 1440 < th dose independent rect. 21 1
275 17.08 humidity 50.0 1440 > th dose independent rect. 21 1
281 17.08 atmosphere 995.0 1440 > th dose independent rect. 21 1
282 17.08 radiation 1.0 1440 < th dose independent rect. 21 1
303 17.08 radiation 10.0 270 > th dose independent rect. 6 4
307 17.08 humidity 90.0 90 < th dose independent rect. 5 8
311 17.08 radiation 20.0 90 < th dose independent rect. 2 9
326 17.08 temperature 10.0 1440 > th dose independent rect. 22 23
329 17.08 radiation 30.0 1440 < th dose dependent rect. 21 1
333 17.08 wind 5.0 30 < th dose dependent rect. 3 6
334 17.08 radiation 30.0 90 < th dose dependent rect. 3 8
344 17.08 atmosphere 995.0 30 > th dose dependent rect. 13 20
345 17.09 humidity 90.0 90 > th dose independent sin 3 NA
351 17.09 temperature 25.0 30 > th dose independent rect. 20 1
364 17.09 humidity 90.0 90 > th dose independent rect. 3 18
366 17.09 wind 7.0 720 > th dose dependent rect. 14 1
368 17.09 radiation 10.0 1440 < th dose dependent rect. 21 1
372 17.09 wind 7.0 720 > th dose dependent rect. 14 4
379 17.09 humidity 80.0 90 > th dose dependent rect. 3 16
380 17.09 temperature 10.0 30 > th dose dependent rect. 9 18
387 17.10 wind 3.0 30 > th dose independent rect. 20 1
388 17.10 radiation 10.0 720 > th dose independent rect. 8 1
396 17.10 humidity 90.0 90 > th dose independent rect. 3 7
405 17.10 wind 1.0 720 < th dose dependent rect. 8 1
406 17.10 temperature 25.0 30 > th dose dependent rect. 20 1
427 17.11 radiation 1.0 270 < th dose independent sin 4 NA
429 17.11 humidity 80.0 30 > th dose independent rect. 20 1
431 17.11 wind 7.0 720 > th dose independent rect. 14 3
438 17.11 humidity 90.0 10 < th dose independent rect. 4 10
445 17.11 humidity 90.0 90 < th dose independent rect. 1 12
460 17.11 atmosphere 1005.0 30 > th dose dependent rect. 20 1
461 17.11 radiation 40.0 14400 < th dose dependent rect. 21 1
462 17.11 temperature 25.0 720 > th dose dependent rect. 6 2
466 17.11 temperature 15.0 30 > th dose dependent rect. 20 7
477 17.12 humidity 90.0 90 < th dose independent sin 4 NA
499 17.12 atmosphere 1000.0 10 < th dose independent rect. 13 14
508 17.12 radiation 30.0 90 < th dose dependent sin 4 NA
511 17.12 wind 1.0 30 > th dose dependent rect. 20 1
514 17.12 atmosphere 995.0 30 > th dose dependent rect. 20 1
530 17.12 humidity 80.0 10 > th dose dependent rect. 3 11
545 17.12 humidity 80.0 10 > th dose dependent rect. 3 17
546 17.12 temperature 10.0 30 > th dose dependent rect. 6 21
555 17.13 wind 5.0 30 < th dose independent rect. 20 1
559 17.13 humidity 90.0 30 < th dose independent rect. 20 1
560 17.13 atmosphere 1005.0 30 > th dose independent rect. 20 1
566 17.13 atmosphere 1000.0 720 > th dose independent rect. 17 7
573 17.13 humidity 90.0 10 < th dose independent rect. 2 12
590 17.13 humidity 50.0 30 > th dose dependent rect. 20 1
629 17.14 temperature 10.0 30 > th dose independent rect. 20 1
631 17.14 temperature 30.0 30 < th dose independent rect. 20 1
632 17.14 humidity 50.0 30 > th dose independent rect. 20 1
635 17.14 atmosphere 995.0 30 > th dose independent rect. 20 1
637 17.14 atmosphere 1010.0 30 < th dose independent rect. 20 1
639 17.14 radiation 1.0 30 < th dose independent rect. 20 1
644 17.14 precipitation 0.1 30 < th dose independent rect. 20 1
663 17.14 atmosphere 1000.0 10 > th dose independent rect. 13 13
666 17.14 radiation 1.0 270 < th dose independent rect. 1 13
683 17.14 humidity 90.0 10 < th dose independent rect. 20 22
685 17.14 temperature 10.0 30 > th dose independent rect. 21 23
686 17.14 precipitation 0.1 270 < th dose independent rect. 4 23
688 17.14 radiation 1.0 30 < th dose dependent rect. 20 1
693 17.14 precipitation 0.1 30 < th dose dependent rect. 20 1
697 17.14 atmosphere 1000.0 10 < th dose dependent rect. 22 4
707 17.14 humidity 70.0 30 > th dose dependent rect. 3 7
709 17.14 wind 7.0 720 > th dose dependent rect. 14 9
734 17.14 precipitation 0.1 270 < th dose dependent rect. 4 23
735 17.15 wind 9.0 720 < th dose independent sin 11 NA
737 17.15 humidity 90.0 10 < th dose independent sin 3 NA
739 17.15 atmosphere 1000.0 10 < th dose independent sin 12 NA
741 17.15 radiation 20.0 90 < th dose independent sin 5 NA
767 17.15 radiation 20.0 270 < th dose independent rect. 24 14
783 17.15 humidity 80.0 90 > th dose dependent sin 3 NA
787 17.15 radiation 1.0 270 < th dose dependent sin 4 NA
790 17.15 wind 9.0 30 < th dose dependent rect. 20 1
800 17.15 radiation 30.0 90 < th dose dependent rect. 3 6
818 17.15 humidity 80.0 90 > th dose dependent rect. 3 20
820 17.16 wind 9.0 720 < th dose independent sin 13 NA
828 17.16 wind 7.0 1440 < th dose independent rect. 14 1
837 17.16 temperature 30.0 10 < th dose independent rect. 13 7
851 17.16 radiation 1.0 270 < th dose independent rect. 1 10
881 17.16 humidity 90.0 10 > th dose independent rect. 3 19
888 17.16 humidity 80.0 10 > th dose dependent sin 2 NA
933 17.16 atmosphere 995.0 10 > th dose dependent rect. 13 17
938 17.16 humidity 90.0 90 > th dose dependent rect. 1 21
951 17.17 wind 3.0 30 < th dose independent rect. 3 6
952 17.17 temperature 25.0 270 < th dose independent rect. 24 6
956 17.17 radiation 20.0 90 < th dose independent rect. 3 6
987 17.17 humidity 90.0 90 < th dose independent rect. 23 14
992 17.17 atmosphere 1000.0 10 > th dose independent rect. 4 15
994 17.17 atmosphere 1000.0 10 < th dose independent rect. 17 16