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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0545200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG) (Pectinase) (Galacturan 1,4-alpha-galacturonidase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0461) R2 : 0.158
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.64 (0.659) R2dE : 0.136 R2E : 0.134
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.306 (0.0972) R2dN8 : 0.0241 R2N8 : 0.0225
σ : 0.867
deviance : 346.3
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 78.94
memory length : 91
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.03
open length of G : 2.73

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
346.52 0.875 3.27 0.0284 0.0219 6.53 -0.614 3.5 -0.301 19.5 79.08 100 3.93 2.92
346.12 0.866 3.26 0.0483 0.0358 5.77 -0.518 -- -0.277 18.4 80 94 4.02 2.82
347.23 0.868 3.27 0.045 0.0716 6.66 -- 4 -0.302 15.7 78.91 100 3.95 2.87
346.81 0.867 3.27 0.0563 0.016 5.89 -- -- -0.278 18.3 79.91 94 4.02 2.78
347.23 0.868 3.27 0.0459 -- 6.5 -- 3.73 -0.302 -- 78.91 100 3.95 2.86
400.94 0.939 3.28 -0.0161 0.0861 -- 0.494 -- -0.341 7.75 -- -- -- --
401.61 0.938 3.28 -0.00254 0.0872 -- -- -- -0.341 8.71 -- -- -- --
346.45 0.867 3.26 0.0263 -- 5.5 -- -- -0.277 -- 79.23 91 4.02 2.75
346.51 0.867 3.27 -- 0.0411 5.66 -- -- -0.288 17.5 79.61 95 4.02 2.75
402.04 0.937 3.28 -0.00236 -- -- -- -- -0.341 -- -- -- -- --
401.61 0.937 3.28 -- 0.0872 -- -- -- -0.341 8.71 -- -- -- --
346.3 0.867 3.27 -- -- 5.64 -- -- -0.306 -- 78.94 91 4.03 2.73
402.04 0.936 3.28 -- -- -- -- -- -0.341 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.93 humidity 80 90 < th dose dependent rect. 4 3
2 348.37 humidity 80 90 < th dose independent rect. 4 3
7 360.08 atmosphere 1000 10 < th dose independent rect. 1 10
9 360.13 atmosphere 1000 10 < th dose independent rect. 7 4
13 360.18 atmosphere 1000 270 < th dose independent rect. 6 1
24 360.57 atmosphere 1005 90 < th dose dependent rect. 6 9
30 361.23 humidity 80 10 < th dose independent rect. 5 3
31 361.27 atmosphere 1005 10 < th dose dependent rect. 22 18
33 361.37 atmosphere 1005 270 < th dose dependent rect. 21 17
36 361.44 atmosphere 1005 90 < th dose dependent rect. 23 16
64 362.74 atmosphere 1005 10 < th dose dependent rect. 7 9
88 363.20 atmosphere 1005 10 < th dose dependent sin 3 NA
118 363.80 atmosphere 1000 270 < th dose independent rect. 21 17
133 364.20 atmosphere 1005 720 < th dose dependent rect. 21 13
153 364.71 atmosphere 1000 720 < th dose independent rect. 22 10
180 365.18 atmosphere 1000 270 > th dose independent sin 6 NA
182 365.21 atmosphere 1000 270 < th dose independent sin 6 NA
187 365.28 humidity 80 10 < th dose dependent rect. 5 3
203 365.66 atmosphere 1000 270 < th dose independent rect. 5 8
206 365.69 atmosphere 1000 720 > th dose independent rect. 21 11
215 365.78 atmosphere 1000 720 > th dose independent rect. 20 13
242 366.02 atmosphere 1000 270 > th dose independent rect. 3 10
244 366.03 atmosphere 1005 720 < th dose dependent sin 8 NA
245 366.04 atmosphere 1000 720 > th dose independent rect. 23 9
250 366.07 atmosphere 1005 10 < th dose dependent rect. 7 20
280 366.33 atmosphere 1000 270 < th dose dependent rect. 6 1
314 366.59 atmosphere 1000 10 < th dose independent rect. 4 7
316 366.60 atmosphere 1000 90 < th dose independent rect. 3 7
342 366.76 atmosphere 1000 30 < th dose dependent rect. 1 10
355 366.81 atmosphere 1005 720 < th dose dependent rect. 3 5
407 367.11 atmosphere 1000 720 > th dose independent sin 10 NA
414 367.15 atmosphere 1000 720 < th dose independent sin 10 NA
473 367.54 atmosphere 1005 720 < th dose dependent rect. 1 8
493 367.70 humidity 80 10 < th dose dependent rect. 19 13
543 367.97 humidity 70 90 < th dose independent rect. 19 12
592 368.26 atmosphere 1000 270 > th dose independent rect. 18 21
593 368.26 humidity 70 90 < th dose dependent rect. 19 12
606 368.33 temperature 30 4320 < th dose independent rect. 11 2
635 368.45 atmosphere 1000 720 > th dose independent rect. 1 7
645 368.51 atmosphere 1000 90 < th dose independent rect. 6 21
650 368.54 atmosphere 1000 10 > th dose independent sin 4 NA
740 369.09 atmosphere 1005 10 < th dose dependent rect. 4 12
754 369.17 temperature 30 4320 > th dose independent rect. 11 2
794 369.45 humidity 80 10 < th dose independent rect. 5 1
799 369.45 humidity 80 10 < th dose dependent rect. 5 1
862 369.70 atmosphere 1005 10 < th dose dependent rect. 4 23
869 369.73 atmosphere 1000 90 > th dose independent rect. 3 23
925 369.93 atmosphere 1000 10 > th dose independent rect. 20 21
950 370.03 temperature 30 4320 < th dose independent rect. 5 8
954 370.04 temperature 30 4320 < th dose independent rect. 3 10
955 370.04 temperature 30 4320 < th dose independent rect. 19 18
962 370.06 temperature 30 4320 < th dose independent rect. 24 13
969 370.09 atmosphere 1000 90 > th dose independent rect. 20 20