Os06g0544100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tyrosine protein kinase domain containing protein.
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Os06g0544100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tyrosine protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.82 | 0.428 | 9.06 | 3.05 | 1.11 | -2.05 | 0.0621 | -7.76 | 0.506 | 4.08 | 1.561 | 5789 | -- | -- |
| 135.98 | 0.543 | 9.18 | 1.78 | 0.994 | -1.18 | 0.703 | -- | 0.35 | 3.68 | 40.94 | 2807 | -- | -- |
| 82.83 | 0.424 | 9.06 | 3.05 | 1.11 | -2.05 | -- | -7.78 | 0.506 | 4.06 | 1.566 | 5790 | -- | -- |
| 126.11 | 0.523 | 9.16 | 1.58 | 0.982 | -1.33 | -- | -- | 0.372 | 4.68 | 40 | 2681 | -- | -- |
| 145.49 | 0.562 | 9.07 | 3.09 | -- | -2.05 | -- | -7.59 | 0.511 | -- | 1.599 | 5748 | -- | -- |
| 204.8 | 0.671 | 9.1 | 1.65 | 1.18 | -- | 0.195 | -- | 0.559 | 4.13 | -- | -- | -- | -- |
| 204.91 | 0.67 | 9.11 | 1.65 | 1.18 | -- | -- | -- | 0.558 | 4.11 | -- | -- | -- | -- |
| 190.97 | 0.644 | 9.16 | 1.51 | -- | -1.33 | -- | -- | 0.366 | -- | 40.11 | 2746 | -- | -- |
| 181.17 | 0.627 | 9.19 | -- | 1.12 | -1.26 | -- | -- | 0.315 | 4.87 | 40.01 | 2722 | -- | -- |
| 280.9 | 0.783 | 9.11 | 1.7 | -- | -- | -- | -- | 0.59 | -- | -- | -- | -- | -- |
| 276.7 | 0.778 | 9.15 | -- | 1.21 | -- | -- | -- | 0.374 | 4.09 | -- | -- | -- | -- |
| 242.22 | 0.725 | 9.18 | -- | -- | -1.6 | -- | -- | 0.0712 | -- | 40 | 2717 | -- | -- |
| 356.98 | 0.882 | 9.15 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.57 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 4 | 68.78 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 10 | 69.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 23 | 69.93 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 26 | 70.04 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 39 | 70.61 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 96 | 71.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 103 | 71.78 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 148 | 72.35 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 153 | 72.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 164 | 72.51 | temperature | 20 | 43200 | > th | dose independent | sin | 19 | NA |
| 202 | 73.01 | temperature | 25 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 227 | 73.39 | temperature | 20 | 43200 | < th | dose independent | sin | 18 | NA |
| 253 | 73.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 257 | 73.70 | temperature | 25 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 258 | 73.70 | temperature | 25 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 275 | 73.85 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 279 | 73.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 289 | 73.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 343 | 74.58 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 352 | 74.66 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 374 | 75.00 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 377 | 75.03 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 380 | 75.06 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 401 | 75.29 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 422 | 75.37 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 432 | 75.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 14 |
| 433 | 75.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 494 | 75.75 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 555 | 75.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 597 | 76.13 | temperature | 30 | 14400 | < th | dose independent | sin | 17 | NA |
| 607 | 76.17 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 637 | 76.27 | temperature | 25 | 14400 | > th | dose independent | sin | 8 | NA |
| 644 | 76.30 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 677 | 76.40 | temperature | 25 | 14400 | > th | dose dependent | sin | 12 | NA |
| 681 | 76.42 | temperature | 30 | 14400 | > th | dose independent | sin | 17 | NA |
| 733 | 76.56 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 752 | 76.58 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 767 | 76.65 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 772 | 76.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 782 | 76.69 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 788 | 76.71 | temperature | 25 | 14400 | < th | dose independent | sin | 8 | NA |
| 830 | 76.85 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 889 | 76.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 908 | 77.00 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 914 | 77.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 917 | 77.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 20 |
| 919 | 77.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 920 | 77.01 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 922 | 77.02 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 951 | 77.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 19 |