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Os06g0543400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.1.37) (SOS2-like protein kinase PKS5) (SOS-interacting protein 4) (SNF1- related kinase 3.22).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.5 | 0.411 | 14.6 | -1.85 | 1.35 | 1.68 | 1.19 | -5.14 | -0.184 | 4.82 | 24.92 | 928 | -- | -- |
| 85.17 | 0.43 | 14.5 | -0.82 | 1.32 | 1.17 | 1.2 | -- | 0.0421 | 4.69 | 24.68 | 928 | -- | -- |
| 79.78 | 0.416 | 14.6 | -1.85 | 1.31 | 1.6 | -- | -4.85 | -0.211 | 4.63 | 24.56 | 952 | -- | -- |
| 88.13 | 0.437 | 14.5 | -0.824 | 1.26 | 1.09 | -- | -- | 0.0721 | 4.39 | 24.95 | 1000 | -- | -- |
| 153.81 | 0.578 | 14.7 | -1.87 | -- | 1.68 | -- | -4.13 | -0.233 | -- | 24.39 | 1155 | -- | -- |
| 119.35 | 0.512 | 14.5 | -0.522 | 1.31 | -- | 0.705 | -- | 0.175 | 3.67 | -- | -- | -- | -- |
| 120.75 | 0.515 | 14.5 | -0.533 | 1.31 | -- | -- | -- | 0.172 | 3.55 | -- | -- | -- | -- |
| 161.6 | 0.592 | 14.5 | -0.874 | -- | 1.27 | -- | -- | 0.0271 | -- | 24.3 | 1171 | -- | -- |
| 104.76 | 0.477 | 14.5 | -- | 1.26 | 0.876 | -- | -- | 0.185 | 4.18 | 25.4 | 993 | -- | -- |
| 217.09 | 0.688 | 14.5 | -0.478 | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
| 128.24 | 0.53 | 14.5 | -- | 1.3 | -- | -- | -- | 0.231 | 3.55 | -- | -- | -- | -- |
| 180.27 | 0.625 | 14.5 | -- | -- | 1.08 | -- | -- | 0.148 | -- | 24.41 | 1166 | -- | -- |
| 223.11 | 0.697 | 14.5 | -- | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.79 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 3 | 76.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 6 | 76.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 9 | 76.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 71 | 78.44 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 81 | 78.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 17 |
| 84 | 78.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 96 | 78.85 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 122 | 80.28 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 138 | 80.78 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 152 | 80.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 155 | 81.00 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 17 |
| 164 | 81.17 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 13 |
| 167 | 81.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 190 | 81.69 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 219 | 82.29 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 260 | 82.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 287 | 83.09 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 288 | 83.12 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 332 | 83.52 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 335 | 83.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 367 | 83.82 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 17 |
| 381 | 83.96 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 412 | 84.35 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 5 |
| 414 | 84.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 415 | 84.39 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 9 |
| 433 | 84.53 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 435 | 84.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 448 | 84.64 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 449 | 84.65 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 1 |
| 516 | 85.17 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 544 | 85.54 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 569 | 85.71 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 580 | 85.79 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 592 | 85.84 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 595 | 85.85 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 596 | 85.85 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 640 | 86.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 644 | 86.03 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 676 | 86.22 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 697 | 86.33 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 791 | 86.57 | temperature | 30 | 720 | < th | dose independent | sin | 16 | NA |
| 876 | 86.70 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 879 | 86.71 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 894 | 86.75 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 976 | 86.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 981 | 86.91 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
